Input parameters:
Query = AT1G01490.2 (Len=177)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G01490.2, Len=177):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKE 80
WD40-rpts (_______________________________WD 1______________________________)
Query 81 EPKKEGGGEPPKKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAYKAYNPHLTT 160
WD40-rpts
Query 161 YYYAQSIEENPNACVIC 177
WD40-rpts
1 WD40-repeats found in QUERY=AT1G01490.2 (Len=177):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-67 3.10 242.88 0.03270 22.5% 49.49
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-67 MKKIVLKLDLHDDRAKQKALKTVSTLPGIDSIAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVL
WD40 Template TGECLRTLSGHT--------------SGVTSVSFSPDGKRL-VSGSED------------GTIKVWD