WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT1G03060.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT1G03060.1 (Len=3601) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT1G03060.1, Len=3601): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MKWATLLKDIKEKVGLAQSSDSDPFPVDLTAPPSSSSSSSSPSFTYPSSSSLHHFNFSPSSRDNHELELDFKRLWEEFRS 80
WD40-rpts
Query 81 SSSEKEKEAALNLTVDIFCRLVKRHANVDQLVTMLVETHIFSFVIGRAFVTDIEKLKIGSKTRSLNVEKVLRFFSDVTKE 160
WD40-rpts
Query 161 GFSPGANLLTAVEVLVSGPIDKQSLLDSGIFCCLIHVLIALLAYDELSKSKITGDLEVVSAEKDAGYIVLQTRRLEVEGS 240
WD40-rpts
Query 241 VVHIMKALASNPSAAQSLIEDDSLESLFNMVANGSITVFSQYKEGLVPLHNIQLHRHAMQILGLLLVNDNGSTARYIRKH 320
WD40-rpts
Query 321 HLIKVLLMAVKEFDPSCGDSAYTMGIVDLLLECVELSYRPEAGGVRLREDIRNAHGYHFLVQFALVLSSLPKNPIFVSSN 400
WD40-rpts
Query 401 HDSGSDDPEVFHDGENTNSTENADFSSQNFAPSLSRLLDVLVTLAQTGPAEPSVGRASRSSQTKPTGHSRSRTSSVDSIY 480
WD40-rpts
Query 481 DETWEQGSGKVKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFSSHVENYRLCQELRTVPLLVLNMAGFPSSLQDIILK 560
WD40-rpts
Query 561 ILEYAVTVVNCVPEQELLSLCCLLQQPITSQLKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLIGPDQYS 640
WD40-rpts
Query 641 GVSSHSDRKPSSGSFRKNLDTKDAIISSPKLMESGSGKLPVFEVDNTITVGWDCLISLLKKAEANQSSFRAANGVAIILP 720
WD40-rpts
Query 721 FLISDAHRSGVLRILSCLITEDTKQVHHDELGAVVDLLKSGMVTGISGHQYKLHDDAKCDTMGALWRIVGVNGSAQRVFG 800
WD40-rpts
Query 801 EATGFSLLLTTLHTFQGKREHMDESDLTVYIKLFKYLFRLMTAAVCENAVNRMKLHAVITSQTFFELLAESGLLCVELER 880
WD40-rpts
Query 881 QVIQLLLELALEVVVPPFLTSESTALATIPENENTTFVVTTPSGQFNPDKERIYNAGAVRVLIRSLLLFSPKMQLEFLRL 960
WD40-rpts
Query 961 LESLARASPFNQENLTSIGCVELLLEIIYPFLAGSSPFLSYALKIVEILGAYRLSPSELRMLFRYVLQMRIMNSGHAIVG 1040
WD40-rpts
Query 1041 MMEKLILMEDTALEHLSLAPFVELDMSKTGHASVQVSLGERSWPPAAGYSFVCWFQFRNFLTTQGKESEASKAGGSSKTR 1120
WD40-rpts
Query 1121 MTSAQQHEQNIFRMFSVGAVSNESPFYAELYFQEDGILTLATSNSHSLSFSGLEIEEGRWHHLAVVHSKPNALAGLFQAS 1200
WD40-rpts
Query 1201 VAYVYLDGKLRHTGKLGYSPSPVGKSLQVTVGTPATCARVSDLTWKTRSCYLFEEVLTSGCIGFMYILGRGYKGLFQDAD 1280
WD40-rpts
Query 1281 LLRFVPNQACGGGSMAILDSLDTDMTSSSNGQKFDGSNRQGDSKADGSGIVWDLERLGNLAFQLPGKKLIFAFDGTCSEF 1360
WD40-rpts
Query 1361 IRASGNFSLLNLVDPLSAAASPIGGIPRFGRLVGNVSICRQSVIGDTIRPVGGMTVVLALVEAAESRNMLHMALSLLACA 1440
WD40-rpts
Query 1441 LHQNPQNVKDMQTIRGYHLLALFLRPKMTLFDMQSLEIFFQIAACEALFSEPKKLESVQSNITMPPTETIFENSYEDLSL 1520
WD40-rpts
Query 1521 SRFRYDSSSVGSHGDMDDFSVPKDSFSHLSELETDIPVETSNCIVLSNADMVEHVLLDWTLWVTSPVSIQIALLGFLENL 1600
WD40-rpts
Query 1601 VSMHWYRNHNLTILRRINLVEHLLVTLQRGDVEVPVLEKLVVLLGCILEDGFLTSELENVVRFVIMTFNPPEVKSRSSLL 1680
WD40-rpts
Query 1681 RESMGKHVIVRNMLLEMLIDLQVTIKAEDLLELWHKIVSSKLITYFLDEAVHPTSMRWIMTLLGVCLASSPNFSLKFRTS 1760
WD40-rpts
Query 1761 GGYQGLLRVLQNFYDSPDIYYILFCLIFGKPVYPRLPEVRMLDFHALVPNDGSYVELKFIELLDSVVAMAKSTYDRLIMQ 1840
WD40-rpts
Query 1841 SMLAHQSGNLSQVSASLVAELIEGAEMTGELQGEALMHKTYAARLMGGEASAPAAATSVLRFMVDLAKMCPQFSTACRRA 1920
WD40-rpts
Query 1921 EFVENCADLYFSCVRAAYAVKMAKQLSVKAEEKHINDADDSGSQGSLPHDQDQSTKTSISVGSFPQGQVSLGSEDMSLPA 2000
WD40-rpts
Query 2001 NYVVNDKMENILPPPTQDTSKSLQGVEDVKKQDDHHVGPSASSERDFQDFTGNPVQVQATDSQSSASFPMIESPLLSEKS 2080
WD40-rpts
Query 2081 SLKVSFTPSPSPVVALASWLGSNYNESKSSTLGSPSLESYVSVNEVDASSERKSGSQGSSAANAFFTVSPKLLLETDETG 2160
WD40-rpts
Query 2161 YGGGPCSAGASAVLDFMAEALADLVTEQIKAVPVLESILEMVPFYVDPESVLVFQGLCLSRVMNYLERRLLRDDEEDEKK 2240
WD40-rpts
Query 2241 LDKAKWSVNLDAFCWMIVDRVYMGAFSQPAGVLRALEFLLSMLQLANKDGRVEEVTPSGKGLLSLGRATRQLDAYVHSIL 2320
WD40-rpts
Query 2321 KNTNRMVLYCFLPSFLITIGEEDLLSQLGLLVESKKRPSPNPATDESGIDISTVLQLLVANRRIIFCPSNLDTDLNCCLC 2400
WD40-rpts
Query 2401 VNLISLLLDQRKSVQNMSLDIVKYLLVHRRSALEDLLVTKPNQGQNFDVLHGGFDKLLTGNLPEFFKWLESSDKIINKVL 2480
WD40-rpts
Query 2481 EQCAAIMWVQYIAGSAKFPGVRIKGMEGRRKREMGRKSRDMSKLDLKHWDQLNERRYALEVLRDAMSTELRVVRQNKYGW 2560
WD40-rpts
Query 2561 ILHAESEWQTHLQQLVHERGIFPMRKSKGTEDPEWQLCPIEGPYRMRKKLERCKLKIDSIQNVLDGKLELGEIELPKVKN 2640
WD40-rpts
Query 2641 EDGPVISDTDSEPPFLLSELYDESFLKESDDFKDVASARNGWNDDRASSTNEASLHSALDFGGKSSIASVPITDTTHVKS 2720
WD40-rpts
Query 2721 ETGSPRHSSSAKMDETNGREEKSEKELNDDGEYLIRPYLEHLEKIRFRYNCERVVDLDKHDGIFLIGEFCLYVIENFYID 2800
WD40-rpts
Query 2801 EDGCICEKECEDELSVIDQALGVKKDVSGSSDFHSKSSTSWTTTVKTGAVGGRAWAYGGGAWGKEKMCMTGNLPHPWRMW 2880
WD40-rpts
Query 2881 KLNNVHEILKRDYQLRPVAIEIFSMDGCNDLLVFHKKEREEVFKNLVAMNLPRNSMLDTTISGSAKQESNEGGRLFKLMA 2960
WD40-rpts
Query 2961 KSFSKRWQNGEISNFQYLMHLNTLAGRGYSDLTQYPVFPWVLADYDSESLDFSDPKTFRKLHKPMGCQTPEGEEEFRKRY 3040
WD40-rpts
Query 3041 ESWDDPEVPKFHYGSHYSSAGIVLFYLIRLPPFSSENQKLQGGQFDHADRLFNSIKDTWLSAAGKGNTSDVKELIPEFFY 3120
WD40-rpts
Query 3121 MPEFLENRFSLDLGEKQSGEKVGDVFLPPWARGSVREFILKHREALESDYVSENLHHWIDLIFGYKQRGKAAEEAVNVFY 3200
WD40-rpts
Query 3201 HYTYEGNVDIDAVTDPAMKASILAQINHFGQTPKQLFPKAHVKRRTDRKIPLHPLKHSMHLVPHEIRKCSSSISQIITFH 3280
WD40-rpts
Query 3281 DKVLVAGANCFLKPRGYTKYITWGFPDRSLRFMSYDQDKLLSTHENLHESNQIQCAGVSHDGRIVVTGAEDGLVCVWRVS 3360
WD40-rpts (___________________WD 1___________________)(_
Query 3361 KDGPRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWDLSSLSFVRQLPDFPVPISAIYINDLTGEIVTA 3440
WD40-rpts _____________________WD 2______________________)
Query 3441 AGTVLAVWSINGDCLAVANTSQLPSDSVLSVTGSTSSDWLETSWYVTGHQSGAVKVWRMIHCTDPVSAESKTSSSNRTGG 3520
WD40-rpts (_________________WD 3________________)
Query 3521 LNLGDQVPEYKLILHKVLKFHKQPVTALHLTSDLKQLLSGDSAGQLLSWTVPDETLRASMKQASLKQASLKQASLKQASS 3600
WD40-rpts (______________WD 4_____________)
Query 3601 V 3601
WD40-rpts
 4 WD40-repeats found in QUERY=AT1G03060.1 (Len=3601): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 39 3315-3358 4.24 289.86 0.00770 25.0% 47.49 WD 2: Seg 43 3359-3408 6.08 365.76 0.00073 32.5% 53.43 WD 3: Seg 52 3460-3498 2.96 237.13 0.03897 25.0% 10.00 WD 4: Seg 56 3538-3570 4.33 293.69 0.00684 27.5% 46.18Multiple sequence alignment of 4 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3315-3358 YDQ------DKLLSTHENLHESNQIQCAGVSHDGRIVVTGAEDGLVCVWR WD 2 3359-3408 VSKDGPRGSRRLRLEKALCAHTAKVTCLRVSQPYMMIASGSDDCTVIIWD WD 3 3460-3498 TSQ----------LPSDSVLSVTGSTSSDWL-ETSWYVTGHQSGAVKVWR WD 4 3538-3570 -----------------LKFHKQPVTALHLTSDLKQLLSGDSAGQLLSWT WD40 Template TGE----------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |