Input parameters:

  Query = AT1G03110.1 (Len=427)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G03110.1, Len=427):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQEESHIEEVEIQNKLEVAPALISVHPSQKSVAVAVGSDLRIFDLIENCPVSLVDESDGPIRKESIRAIRYSTSGKLFVS 80  
WD40-rpts           (_________________WD 1________________)         (________________WD 2______

Query       81 AGDDKLVKIWSADSWRCLNTVCSEKRVSAVAISSDDSHVCYADKFGVVWVIELDGINDGKTLPSKKGALLLSHYCSIITS 160 
WD40-rpts      __________)   (________________WD 3________________)                (___________

Query      161 LEFSPDGRYILSADRDFKIRVTVFPKKPLEGAHEIQSFCLGHSEFITCTAFVSTPELTQGYLMSGSGDSTVRLWDITSGS 240 
WD40-rpts      ____WD 4______________)          (__________________WD 5__________________)(____

Query      241 LLDTCEVSTVAGHAESNENESPTQVTVTDICAIPNSSLAAVAIQSFQGIFLLSCDLTAHTLSITKVIKIPGESFIPTSIA 320 
WD40-rpts      _________________WD 6____________________)                                      

Query      321 VSASSRLLWMVSGASNLPGSNHPGFSRVRVISCLETESSSILEDEQIPGGTKLLEQLQGKVTIEESVMSAAAEAVRAAMS 400 
WD40-rpts         (_____________________WD 7_____________________)                             

Query      401 SLLMKKQYSEEKREFRKRTRNDKKTTR 427 
WD40-rpts                                 

7 WD40-repeats found in QUERY=AT1G03110.1 (Len=427):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     6-44       6.07  365.44  0.00074       12.5%     50.41
  WD 2:  Seg  6    54-91       8.08  448.40  5.6e-05       22.5%     41.08
  WD 3:  Seg  9    95-132      7.65  430.52  9.8e-05       22.5%     55.88
  WD 4:  Seg 13   149-183      8.75  476.06  2.4e-05       35.0%     47.47
  WD 5:  Seg 16   194-235      8.12  450.07  5.3e-05       32.5%     42.72
  WD 6:  Seg 19   236-282      6.41  379.50  0.00048       10.0%     30.77
  WD 7:  Seg 25   324-371      6.83  396.63  0.00028       20.0%     36.43

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    6-44     HIE-------EV--------EIQNKLEVAPALISVHPSQKS----VAVAV-GSDLRIFD
   WD 2   54-91     VDE-----------------SDGPIRKESIRAIRYSTSGKL----FVSAGDDKLVKIWS
   WD 3   95-132    -WR-------CL--------NTVCSEKR-VSAVAISSDDSH----VCYADKFGVVWVIE
   WD 4  149-183    --------------------LLLSHYCSIITSLEFSPDGRY----ILSADRDFKIRVTV
   WD 5  194-235    --E-------IQ--------SFCLGHSEFITCTAFVSTPELTQGYLMSGSGDSTVRLWD
   WD 6  236-282    ITSGSLLDTCEV--------STVAGHAESNENESPTQVTVT----DICAIPNSSLAAVA
   WD 7  324-371    SSR-------LLWMVSGASNLPGSNHPGFSRVRVISCLETE----SSSILEDEQIPGGT

   WD40 Template    TGE-------CL--------RTLSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD