Input parameters:

  Query = AT1G03380.1 (Len=959)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G03380.1, Len=959):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISAAEDDKDQVTWAGFGILELGQHVTRHVLLL 80  
WD40-rpts                                                                                      

Query       81 GYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARSGDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDG 160 
WD40-rpts                                                               (___________________WD 

Query      161 SSDSKAGDAINYPTTVRFYSLRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240 
WD40-rpts      1__________________)                                                            

Query      241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYAMESSKQLANGLINLGDMGYK 320 
WD40-rpts                                                                                      

Query      321 TLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMVAVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCG 400 
WD40-rpts           (_________________WD 2________________)   (_________________WD 3___________

Query      401 NNINVFQIMPSRSHNAPGDLSYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480 
WD40-rpts      ______)                     (_________________WD 4_________________)            

Query      481 CEGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNATTAATGKVFVPSGAVAAVFHKSV 560 
WD40-rpts                                                     (_________________WD 5___________

Query      561 THDLQLNSRTNALEHILVYTPSGHVVQHELLPSVCTESPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETE 640 
WD40-rpts      _____)             (___________________WD 6__________________)         (________

Query      641 ERLPKSITEKQYDLETVSNHLTSHEDACLSLDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNSKISF 720 
WD40-rpts      __________WD 7_________________)                                                

Query      721 HVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDRFSMKCYHTSATGSHQVNGKICQDIINCHSK 800 
WD40-rpts                                                                                      

Query      801 PGSIESAESSEEGSTKQMENLHDSDHMSNSIKSSLPLYPTVNGIYKEIEKNNANGWMEKPVTAKLSTLKETRITNGFTTP 880 
WD40-rpts                                                                                      

Query      881 PILTDSVNEQMLSTGKPPMGFGFALHEEHCKAVADPKEEHLKKKLDEVTNVHHLNVNNNNTEKLQGDKMVHGMVSFVGD 959 
WD40-rpts                                                                                     

7 WD40-repeats found in QUERY=AT1G03380.1 (Len=959):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   138-180      5.62  346.98  0.00131       20.0%      2.45
  WD 2:  Seg 15   326-364      5.31  333.86  0.00197       10.0%      1.20
  WD 3:  Seg 16   368-407      7.31  416.45  0.00015       32.5%     55.98
  WD 4:  Seg 20   429-468      5.07  323.93  0.00268       22.5%     56.03
  WD 5:  Seg 25   528-566      2.86  232.67  0.04462       22.5%     20.82
  WD 6:  Seg 28   580-622      3.90  275.93  0.01184       10.0%     17.21
  WD 7:  Seg 31   632-672      4.70  308.96  0.00426       12.5%     -0.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  138-180    GD-E---TNGTGLGHSFSQNG-SLARDGSSDSKAGDAINYPTT-VRFYS
   WD 2  326-364    -C-Q---DMLP---DGSTSPA-SPNAIWKVGGVSGSDAENAGM-VAVKD
   WD 3  368-407    -G-A---LVSQ---FKAHTSP-ISALCFDPSGTLLVTASVCGNNINVFQ
   WD 4  429-468    -V-H---LFKL---HRGITSAIVQDICFSQQSQWVAIISSKGT-CHIFV
   WD 5  528-566    -F-G---WLNT---VSNATTA-ATGKVFVPSGAVAAVFHKSVT-HDLQL
   WD 6  580-622    TP-SGHVVQHE---LLPSVCT-ESPENGLRVQKTSHVQVQEDD-LRVKV
   WD 7  632-672    RRSD---WLET---EERLPKS-ITEKQYDLETVSNHLTSHEDA-CLSLD

   WD40 Template    TG-E---CLRT---LSGHTSG-VTSVSFSPDGKRLVSGSEDGT-IKVWD