Input parameters:

  Query = AT1G03750.1 (Len=862)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G03750.1, Len=862):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSLLHTFKETLKPCGSFPSSSSLRVSSTQELEPSRKPPKSSLSQQLLRLDDSYFLPSKHESKISKTQVEDFDHNEDDHKR 80  
WD40-rpts                                                                                      

Query       81 NIKFDEEEVDEDDERSIEFGRPGLSRAEFDYSGPYEPLMLSSIGEIPIIHVPASINCRLLEHQREGVKFMYNLYKNNHGG 160 
WD40-rpts                                                                                      

Query      161 ILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDMILEK 240 
WD40-rpts                                                                                      

Query      241 LKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWV 320 
WD40-rpts                                                                                      

Query      321 APGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQR 400 
WD40-rpts                                                                                      

Query      401 RVYQRMIQLPEIQCLVNKDNPCACGSPLKQSECCRRIVPDGTIWSYLHRDNHDGCDSCPFCLVLPCLMKLQQISNHLELI 480 
WD40-rpts                                                                                      

Query      481 KPNPKDEPEKQKKDAEFVSTVFGTDIDLLGGISASKSFMDLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDIL 560 
WD40-rpts                                                                                      

Query      561 EKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRY 640 
WD40-rpts            (_________________________WD 1_________________________)                  

Query      641 GQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSDIVEL 720 
WD40-rpts                                                                                      

Query      721 HRDSNIDENKKRSLLETGVSEDEKEEEVMCSYKPEMEKPILKDLGIVYAHRNEDIINIGETTTSTSQRLNGDGNSADRKK 800 
WD40-rpts                                                                                      

Query      801 KKRKGCSEEEDMSSSNREQKREKYKMLAEFKGMEILEFSRWVLSASPFDREKLLQDFLERVK 862 
WD40-rpts                                                                    

1 WD40-repeats found in QUERY=AT1G03750.1 (Len=862):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   567-622      2.94  236.24  0.04003       25.0%     33.77

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  567-622    KGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSAN-RVVIFD

   WD40 Template    TGECLRTLSGHTS-----------------GVTSVSFSPDGKRLVSGSEDGTIKVWD