Input parameters:

  Query = AT1G04140.1 (Len=790)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G04140.1, Len=790):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTESIWLNDQSSPRSMIPSAKPVANVHRQRCRSVFKLLVQREISPNTKFVPRKRWGESRCDADSSCGTTSEPVREQGLNL 80  
WD40-rpts      (_______________WD 1_______________)      (_______________________WD 2__________

Query       81 ISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEI 160 
WD40-rpts      ____________)(________________WD 3________________)   (_________________WD 4____

Query      161 VASGSLDHEVRLWNAKTGECIRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRAVHFH 240 
WD40-rpts      _____________)   (________________WD 5_______________)          (_______________

Query      241 PHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVPLPYLLLPSYSADDPRILYSSG 320 
WD40-rpts      WD 6______________) (_________________WD 7________________)                     

Query      321 TTGPRNAQTRFQSNQSSVEHGSRTISPSPLPMATSADLSGSYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVGRN 400 
WD40-rpts             (_________________WD 8________________)   (_________________WD 9_________

Query      401 RVPSQVSSQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTGSSGHVNSTPYMGSSSASHSSTASLE 480 
WD40-rpts      _______)       (_________________WD10________________)   (_________________WD11_

Query      481 AGVASLEIPGGVNLYGVSARGDSRDRILQSRFAGSGLAEGRSSRNTQHEGADAQPVVNRIPSELASSIAAAELPCTVKLR 560 
WD40-rpts      _______________)                (______________________WD12_____________________

Query      561 VWSHDIKDPCSILKSDKCRLTIHHAVLCSEMGAHFSPCGRYLAACVACVIPHAETDPSLQTLVQQDSGLATSPTRHPVTA 640 
WD40-rpts      )                                                      (_______________WD13_____

Query      641 HQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVSDGETTSHFFTVLEIYRVSD 720 
WD40-rpts      __________)(_____________________WD14_____________________)                     

Query      721 MELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFRYNTAAASNLTAPNSSPDENLAEVQTYALEC 790 
WD40-rpts      (_________________WD15_________________)                              

15 WD40-repeats found in QUERY=AT1G04140.1 (Len=790):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       4.93  318.35  0.00319       12.5%     18.07
  WD 2:  Seg  3    43-93       5.99  362.11  0.00082       20.0%     39.36
  WD 3:  Seg  6    94-131      8.64  471.69  2.7e-05       30.0%     51.89
  WD 4:  Seg 10   135-174      8.46  464.16  3.5e-05       35.0%     51.36
  WD 5:  Seg 14   178-214      6.41  379.27  0.00048       27.5%     53.51
  WD 6:  Seg 18   225-259      7.10  408.12  0.00020       20.0%     46.04
  WD 7:  Seg 20   261-299      6.67  390.02  0.00034       10.0%     32.51
  WD 8:  Seg 26   328-366      4.85  314.99  0.00354       20.0%     32.35
  WD 9:  Seg 29   370-408      7.01  404.05  0.00022       15.0%     25.59
  WD10:  Seg 31   416-454      5.95  360.25  0.00087       10.0%     17.40
  WD11:  Seg 33   458-496      3.70  267.45  0.01539       15.0%     -2.12
  WD12:  Seg 34   513-561      5.14  326.86  0.00245       15.0%     17.07
  WD13:  Seg 39   616-651      5.47  340.62  0.00160       20.0%     30.71
  WD14:  Seg 43   652-699      4.22  289.17  0.00787       17.5%     40.77
  WD15:  Seg 48   721-760      7.52  425.46  0.00011       27.5%     45.70

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     MTE------SI-----------WL----NDQS--SPRSMIP-S-AKPV--ANVHR-QRCRSVFK
   WD 2   43-93     ISP------NTKFVPRKRWGESRCDADSSCGT--TSEPVRE-Q-GLNL--ISWVE-AESLQHLS
   WD 3   94-131    AKY------C-------------PLVPPPRST--IAAAFSS-D-GRTL--ASTHG-DHTVKIID
   WD 4  135-174    -GK------CL-----------KILTGHRRTP--WVVRFHPRH-SEIV--ASGSL-DHEVRLWN
   WD 5  178-214    -GE------CI-----------RTHDFYRP-I--ASIAFHA-G-GELL--AVAS--GHKLHIWH
   WD 6  225-259    ----------------------AIVLKTRRSL--RAVHFHP-H-GVPL--LLTAE-VTDIDSSD
   WD 7  261-299    -AM------TR-----------STSPGYLRYP--PPAIFFT-N-TQSG--SRTSL-AAELPLVP
   WD 8  328-366    ----------Q-----------TRFQSNQSSVEHGSRTISP-S-PLPM--ATSADLSGSYHVPD
   WD 9  370-408    -SN------TF-----------ATQAGARNST--TAVDAMD-V-DEAQ--PVGRN-RVPSQVSS
   WD10  416-454    -GQ------LQ-----------QLFHFRDRGS--WELPFLQ-G-WLMA--QSQAG-ANSVALPT
   WD11  458-496    -GH------VN-----------STPYMGSSSA--SHSSTAS-L-EAGV--ASLEI-PGGVNLYG
   WD12  513-561    AGS------GL--AEGRSSRNTQHEGADAQPV--VNRIPSE-L-ASSI--AAAEL-PCTVKLRV
   WD13  616-651    -DP------SL-----------QTLVQQDSGL-----ATSP-T-RHPV--TAHQV-MYELRVYS
   WD14  652-699    LEKESFGSVLV-----------SRAIRAAHCL--TSIQFSP-T-SEHILLAYGRR-HGSLLKSI
   WD15  721-760    -ME------LV-----------RVLPSSEDEV--NVACFHP-SPGGGL--VYGTK-EGKLRIFR

   WD40 Template    TGE------CL-----------RTLSGHTSGV--TSVSFSP-D-GKRL--VSGSE-DGTIKVWD