Input parameters:

  Query = AT1G04140.2 (Len=793)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G04140.2, Len=793):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTESIWLNDQSSPRSMIPSAKPVANVHRQRCRSVFKLLVQREISPNTKFVPRKRWGESRCDADSSCGTTSEPVREQGLNL 80  
WD40-rpts      (_______________WD 1_______________)                                            

Query       81 ISWVEAESLQHLSAKYCPLVPPPRSTIAAAFSSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEI 160 
WD40-rpts          (_____________________WD 2____________________)   (_________________WD 3____

Query      161 VASGSLDHEVRLWNAKTGECIRTHDFYRPIASIAFHAGGELLAVASGHKLHIWHYNKGGDDSAPAIVLKTRRSLRAVHFH 240 
WD40-rpts      _____________)   (________________WD 4_______________)      (_________________WD

Query      241 PHGVPLLLTAEVTDIDSSDSAMTRSTSPGYLRYPPPAIFFTNTQSGSRTSLAAELPLVPLPYLLLPSYSADDPRILYSSG 320 
WD40-rpts       5________________) (_________________WD 6________________)                     

Query      321 TTGPRNAQTRFQSNQSSVEHGSRTISPSPLPMATSADLSGSYHVPDNSASNTFATQAGARNSTTAVDAMDVDEAQPVGRN 400 
WD40-rpts                (_______________WD 7_______________)   (_________________WD 8_________

Query      401 RVPSQVSSQPDLLEFGQLQQLFHFRDRGSWELPFLQGWLMAQSQAGANSVALPTGSSGHVNSTPYMGSSSASHSSTASLE 480 
WD40-rpts      _______)       (_________________WD 9________________)   (_________________WD10_

Query      481 AGVASLEIPGGVNLYGVSARGDSRDRILQSRFAGSGLAEGRSSRNTQHEGADAQPVVNRIPSELASSIAAAELPCTVKLR 560 
WD40-rpts      _______________)                          (_________________WD11________________

Query      561 VWSHDIKDPCSILKSDKCRLTIHHAVLCSEMGAHFSPCGRYLAACVACVIPHAETDPSLQTLVQQDSGLATSPTRHPVTA 640 
WD40-rpts      )                                                   (_________________WD12______

Query      641 HQVMYELRVYSLEKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVSDGETTSHFFTVLEIYRVSD 720 
WD40-rpts      __________)(_____________________WD13_____________________)                     

Query      721 MELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFRYNTAAASNLTAPNSSPDENLAEVELLTRCRPMR 793 
WD40-rpts      (_________________WD14_________________)                                 

14 WD40-repeats found in QUERY=AT1G04140.2 (Len=793):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-36       4.28  291.53  0.00731       12.5%     16.53
  WD 2:  Seg  6    85-131      8.51  466.33  3.2e-05       32.5%     52.83
  WD 3:  Seg 10   135-174      8.72  474.90  2.5e-05       35.0%     48.88
  WD 4:  Seg 14   178-214      6.39  378.68  0.00049       27.5%     51.93
  WD 5:  Seg 17   221-259      7.14  409.66  0.00019       20.0%     43.85
  WD 6:  Seg 20   261-299      6.90  399.57  0.00026       10.0%     33.31
  WD 7:  Seg 27   331-366      4.49  300.33  0.00557       20.0%     32.28
  WD 8:  Seg 31   370-408      7.48  423.59  0.00012       15.0%     25.09
  WD 9:  Seg 33   416-454      6.33  375.94  0.00053       10.0%     16.83
  WD10:  Seg 36   458-496      4.32  293.22  0.00694       15.0%      1.32
  WD11:  Seg 37   523-561      2.83  231.49  0.04625       10.0%     24.29
  WD12:  Seg 43   613-651      5.95  360.30  0.00087       12.5%     23.70
  WD13:  Seg 45   652-699      3.43  256.44  0.02159       20.0%     36.49
  WD14:  Seg 50   721-760      7.49  423.94  0.00012       27.5%     46.39

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-36     MTE------SIW-------L----NDQS--SPRSMIP-S-AKP--VANVHR-QRCRSVFK
   WD 2   85-131    EAE------SLQHLSAKYCPLVPPPRST--IAAAFSS-D-GRT--LASTHG-DHTVKIID
   WD 3  135-174    -GK------CLK-------ILTGHRRTP--WVVRFHPRH-SEI--VASGSL-DHEVRLWN
   WD 4  178-214    -GE------CIR-------THDFYRP-I--ASIAFHA-G-GEL--LAVAS--GHKLHIWH
   WD 5  221-259    -DS------APA-------IVLKTRRSL--RAVHFHP-H-GVP--LLLTAE-VTDIDSSD
   WD 6  261-299    -AM------TRS-------TSPGYLRYP--PPAIFFT-N-TQS--GSRTSL-AAELPLVP
   WD 7  331-366    --------------------FQSNQSSVEHGSRTISP-S-PLP--MATSADLSGSYHVPD
   WD 8  370-408    -SN------TFA-------TQAGARNST--TAVDAMD-V-DEA--QPVGRN-RVPSQVSS
   WD 9  416-454    -GQ------LQQ-------LFHFRDRGS--WELPFLQ-G-WLM--AQSQAG-ANSVALPT
   WD10  458-496    -GH------VNS-------TPYMGSSSA--SHSSTAS-L-EAG--VASLEI-PGGVNLYG
   WD11  523-561    -SR------NTQ-------HEGADAQPV--VNRIPSE-L-ASS--IAAAEL-PCTVKLRV
   WD12  613-651    -AE------TDP-------SLQTLVQQD--SGLATSP-T-RHP--VTAHQV-MYELRVYS
   WD13  652-699    LEKESFGSVLVS-------RAIRAAHCL--TSIQFSP-T-SEHILLAYGRR-HGSLLKSI
   WD14  721-760    -ME------LVR-------VLPSSEDEV--NVACFHP-SPGGG--LVYGTK-EGKLRIFR

   WD40 Template    TGE------CLR-------TLSGHTSGV--TSVSFSP-D-GKR--LVSGSE-DGTIKVWD