Input parameters:

  Query = AT1G04510.1 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G04510.1, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVKPKPLHTASIPGLLGTFQTEW 80  
WD40-rpts                                        (_____________________________________________

Query       81 DSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEAERQLPAAPEVATSNAALSNGKRGIDDGE 160 
WD40-rpts      ____________________WD 1________________________________________________________

Query      161 QGPNAKKMRLGISAEVITELTDCNAALSQQRKKRQIPKTLASVDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDVIATG 240 
WD40-rpts      ________)          (_____________WD 2_____________)(_________________WD 3_______

Query      241 GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHAT 320 
WD40-rpts      _________)   (_________________WD 4________________)(____________________WD 5___

Query      321 NKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDVNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEIT 400 
WD40-rpts      ________________)   (__________________WD 6__________________)   (______________

Query      401 SISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDANSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSG 480 
WD40-rpts      __WD 7________________)(________________WD 8________________)         (_________

Query      481 TGKATSVKFGLDSKYIAVGSMDRNLRIFGLPDDDNTEDSAQDS 523 
WD40-rpts      ________WD 9________________)              

9 WD40-repeats found in QUERY=AT1G04510.1 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    35-169      3.25  249.01  0.02711       20.0%      3.32
  WD 2:  Seg  4   180-211      2.95  236.48  0.03974       10.0%     18.62
  WD 3:  Seg  6   212-250      7.02  404.64  0.00022       15.0%     47.09
  WD 4:  Seg  9   254-292      9.98  526.89  4.9e-06       37.5%     55.99
  WD 5:  Seg 13   293-337      8.26  456.07  4.4e-05       32.5%     53.29
  WD 6:  Seg 17   341-382      7.85  438.98  7.5e-05       32.5%     57.80
  WD 7:  Seg 21   386-423      7.97  443.77  6.5e-05       32.5%     45.38
  WD 8:  Seg 24   424-461      5.39  337.23  0.00177       20.0%     46.24
  WD 9:  Seg 27   471-509      6.60  387.48  0.00037       25.0%     47.45

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-169    YGK-----CPVTGEPHTLDDIVPIKTGKIVKPKPLHTASIPGLLGTFQTEWDSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEAERQLPAAPEV---ATSNAALSNGKRGIDDGEQGPNAKKMR
   WD 2  180-211    --------------------------------------L----------------------------------------------------------------------TDCN---AALSQQRKKRQIPKTLASVDALEKFTQ
   WD 3  212-250    L-S-----S-------------------------HPLHK----------------------------------------------------------------------TNKP---GIFSMDILHSKDVIATGGIDTTAVLFD
   WD 4  254-292    -GQ-----I-------------------------LSTLT----------------------------------------------------------------------GHSK---KVTSIKFVGDTDLVLTASSDKTVRIWG
   WD 5  293-337    CSEDGNYTS-------------------------RHTLK----------------------------------------------------------------------DHSA---EVRAVTVHATNKYFVSASLDSTWCFYD
   WD 6  341-382    -GL-----C-------------------------LAQVT----------------------------------------------------------------------DASENDVNYTAAAFHPDGLILGTGTAQSIVKIWD
   WD 7  386-423    -QA-----N-------------------------VAKFG----------------------------------------------------------------------GHNG---EITSISFSENGYFLATAALDG-VRLWD
   WD 8  424-461    LRK-----L-------------------------KNFRT----------------------------------------------------------------------FDFP---DANSVEFDHSGSYLGIAASD--IRVFQ
   WD 9  471-509    -PI-----K-------------------------TLPDL----------------------------------------------------------------------SGTG---KATSVKFGLDSKYIAVGSMDRNLRIFG

   WD40 Template    TGE-----C-------------------------LRTLS----------------------------------------------------------------------GHTS---GVTSVSFSPDGKRLVSGSEDGTIKVWD