Input parameters:

  Query = AT1G04510.2 (Len=523)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G04510.2, Len=523):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNCAISGEVPEEPVVSKKSGLLYEKRLIQTHISDYGKCPVTGEPHTLDDIVPIKTGKIVKPKPLHTASIPGLLGTFQTEW 80  
WD40-rpts                                                                                      

Query       81 DSLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRQLLAEAERQLPAAPEVATSNAALSNGKRGIDDGE 160 
WD40-rpts                                                                                      

Query      161 QGPNAKKMRLGISAEVITELTDCNAALSQQRKKRQIPKTLASVDALEKFTQLSSHPLHKTNKPGIFSMDILHSKDVIATG 240 
WD40-rpts                                                                (_____________WD 1____

Query      241 GIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHAT 320 
WD40-rpts      _________)   (_________________WD 2________________)(____________________WD 3___

Query      321 NKYFVSASLDSTWCFYDLSSGLCLAQVTDASENDVNYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEIT 400 
WD40-rpts      ________________)   (__________________WD 4__________________)   (______________

Query      401 SISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDANSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSG 480 
WD40-rpts      __WD 5________________)(________________WD 6________________)(__________________

Query      481 TGKSTSVKFGLDSKYIAVGSMDRNLRIFGLPDDDNTEDSAQDS 523 
WD40-rpts      ___WD 7_____________________)              

7 WD40-repeats found in QUERY=AT1G04510.2 (Len=523):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   219-250      6.12  367.50  0.00069       15.0%     47.64
  WD 2:  Seg  7   254-292     10.07  530.82  4.4e-06       37.5%     57.16
  WD 3:  Seg 11   293-337      8.38  460.97  3.8e-05       32.5%     53.80
  WD 4:  Seg 15   341-382      7.99  444.73  6.3e-05       32.5%     58.45
  WD 5:  Seg 19   386-423      8.10  449.26  5.5e-05       30.0%     50.20
  WD 6:  Seg 23   424-461      5.50  341.66  0.00155       20.0%     45.79
  WD 7:  Seg 27   462-509      7.15  409.93  0.00019       25.0%     52.26

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  219-250    ---------------------KTNKP---GIFSMDILHSKDVIATGGIDTTAVLFD
   WD 2  254-292    -GQ-----I--------LSTLTGHSK---KVTSIKFVGDTDLVLTASSDKTVRIWG
   WD 3  293-337    CSEDGNYTS--------RHTLKDHSA---EVRAVTVHATNKYFVSASLDSTWCFYD
   WD 4  341-382    -GL-----C--------LAQVTDASENDVNYTAAAFHPDGLILGTGTAQSIVKIWD
   WD 5  386-423    -QA-----N--------VAKFGGHNG---EITSISFSENGYFLATAALD-GVRLWD
   WD 6  424-461    LRK-----L--------KNFRTFDFP---DANSVEFDHSGSYLGIAASD--IRVFQ
   WD 7  462-509    AAS-----VKAEWNPIKTLPDLSGTG---KSTSVKFGLDSKYIAVGSMDRNLRIFG

   WD40 Template    TGE-----C--------LRTLSGHTS---GVTSVSFSPDGKRLVSGSEDGTIKVWD