WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: AT1G05570.1    [Arabidopsis thaliana]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = AT1G05570.1 (Len=1950)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G05570.1, Len=1950):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQRREPDPPPPQRRILRTQTVGSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYLCRFYAFEKAHRLDPTSSG 80  
WD40-rpts                                                                                      

Query       81 RGVRQFKTALLQRLERENETTLAGRQKSDAREMQSFYQHYYKKYIQALLNAADKADRAQLTKAYQTAAVLFEVLKAVNQT 160 
WD40-rpts                                                                                      

Query      161 EDVEVADEILETHNKVEEKTQIYVPYNILPLDPDSQNQAIMRLPEIQAAVAALRNTRGLPWTAGHKKKLDEDILDWLQSM 240 
WD40-rpts                                                                                      

Query      241 FGFQKDNVLNQREHLILLLANVHIRQFPKPDQQPKLDDRALTIVMKKLFRNYKKWCKYLGRKSSLWLPTIQQEVQQRKLL 320 
WD40-rpts                                                                                      

Query      321 YMGLYLLIWGEAANLRFMPECLCYIYHHMAFELYGMLAGSVSPMTGEHVKPAYGGEDEAFLQKVVTPIYQTISKEAKRSR 400 
WD40-rpts                                                                                      

Query      401 GGKSKHSVWRNYDDLNEYFWSIRCFRLGWPMRADADFFCQTAEELRLERSEIKSNSGDRWMGKVNFVEIRSFWHIFRSFD 480 
WD40-rpts                                                                                      

Query      481 RLWSFYILCLQAMIVIAWNGSGELSAIFQGDVFLKVLSVFITAAILKLAQAVLDIALSWKARHSMSLYVKLRYVMKVGAA 560 
WD40-rpts                                                                                      

Query      561 AVWVVVMAVTYAYSWKNASGFSQTIKNWFGGHSHNSPSLFIVAILIYLSPNMLSALLFLFPFIRRYLERSDYKIMMLMMW 640 
WD40-rpts                                                                                      

Query      641 WSQPRLYIGRGMHESALSLFKYTMFWIVLLISKLAFSYYAEIKPLVGPTKDIMRIHISVYSWHEFFPHAKNNLGVVIALW 720 
WD40-rpts                                                                                      

Query      721 SPVILVYFMDTQIWYAIVSTLVGGLNGAFRRLGEIRTLGMLRSRFQSIPGAFNDCLVPQDNSDDTKKKRFRATFSRKFDQ 800 
WD40-rpts                                                                                      

Query      801 LPSSKDKEAARFAQMWNKIISSFREEDLISDREMELLLVPYWSDPDLDLIRWPPFLLASKIPIALDMAKDSNGKDRELKK 880 
WD40-rpts                                                                                      

Query      881 RLAVDSYMTCAVRECYASFKNLINYLVVGEREGQVINDIFSKIDEHIEKETLITELNLSALPDLYGQFVRLIEYLLENRE 960 
WD40-rpts                                                                                      

Query      961 EDKDQIVIVLLNMLELVTRDIMEEEVPSLLETAHNGSYVKYDVMTPLHQQRKYFSQLRFPVYSQTEAWKEKIKRLHLLLT 1040
WD40-rpts                                                                                      

Query     1041 VKESAMDVPSNLEARRRLTFFSNSLFMDMPPAPKIRNMLSFSVLTPYFSEDVLFSIFGLEQQNEDGVSILFYLQKIFPDE 1120
WD40-rpts                                                                                      

Query     1121 WTNFLERVKCGNEEELRAREDLEEELRLWASYRGQTLTKTVRGMMYYRKALELQAFLDMAKDEELLKGYKALELTSEEAS 1200
WD40-rpts                                                                                      

Query     1201 KSGGSLWAQCQALADMKFTFVVSCQQYSIHKRSGDQRAKDILRLMTTYPSIRVAYIDEVEQTHKESYKGTEEKIYYSALV 1280
WD40-rpts                                                                                      

Query     1281 KAAPQTKPMDSSESVQTLDQLIYRIKLPGPAILGEGKPENQNHAIIFTRGEGLQTIDMNQDNYMEEAFKMRNLLQEFLEK 1360
WD40-rpts                                                                                      

Query     1361 HGGVRCPTILGLREHIFTGSVSSLAWFMSNQENSFVTIGQRVLASPLKVRFHYGHPDIFDRLFHLTRGGICKASKVINLS 1440
WD40-rpts                                                                                      

Query     1441 EDIFAGFNSTLREGNVTHHEYIQVGKGRDVGLNQISMFEAKIANGNGEQTLSRDLYRLGHRFDFFRMLSCYFTTIGFYFS 1520
WD40-rpts                                                                                      

Query     1521 TMLTVLTVYVFLYGRLYLVLSGLEEGLSSQRAFRNNKPLEAALASQSFVQIGFLMALPMMMEIGLERGFHNALIEFVLMQ 1600
WD40-rpts                                                                                      

Query     1601 LQLASVFFTFQLGTKTHYYGRTLFHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKGIELMILLLVYQIFGQSYRGVV 1680
WD40-rpts                                      (_______________________________________________

Query     1681 TYILITVSIWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWIYNRGGIGVPPEKSWESWWEKELEHLRHSGVRGITLE 1760
WD40-rpts      _WD 1________________________________________________)                          

Query     1761 IFLALRFFIFQYGLVYHLSTFKGKNQSFWVYGASWFVILFILLIVKGLGVGRRRFSTNFQLLFRIIKGLVFLTFVAILIT 1840
WD40-rpts                                                                                      

Query     1841 FLALPLITIKDLFICMLAFMPTGWGMLLIAQACKPLIQQLGIWSSVRTLARGYEIVMGLLLFTPVAFLAWFPFVSEFQTR 1920
WD40-rpts                                                                                      

Query     1921 MLFNQAFSRGLQISRILGGQRKDRSSKNKE 1950
WD40-rpts                                    



1 WD40-repeats found in QUERY=AT1G05570.1 (Len=1950):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 19  1633-1734     3.23  248.18  0.02780       27.5%      9.39
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1 1633-1734   TGRGFVVFHAKFAENYRFYSRSHFVKGIELMILLLVYQIFGQSYRGVVTYILITVSIWFMVVTWLFAPFLFNPSGFEWQKIVDDWTDWNKWIYNRGGIGVPP

   WD40 Template    TGECLRTLSG---------HTS--------------------GVTSVS----------------------FSPDGKRLVSGSED-----------GTIKVWD


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Last modified: 09 Jan 2019