Input parameters:

  Query = AT1G05630.1 (Len=1170)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G05630.1, Len=1170):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSLIIEEEDEEALATLVPVPPRRKTHSYSLQFDHKPHHQIRKHSLDEVPRSATLASEAVYFDSSDDEFSTGGNITENAA 80  
WD40-rpts                                                                                      

Query       81 DETNAGAEEYTIVNPPPNVGLGDDDTEPLPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACT 160 
WD40-rpts                                                                                      

Query      161 ETQLWAGQENGIRFWNLEDAYEAGCGIGGQVPRGDEDTAPFHESVTTSPTMCLVADQSNKLLWSGHKDGKIRAWKMDQSS 240 
WD40-rpts            (________________________________WD 1_______________________________)     

Query      241 VSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGGVIKIWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQ 320 
WD40-rpts                (________________WD 2________________)                                

Query      321 VTVNGTCSISSSEVKFLLADSVRAKVWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSAS 400 
WD40-rpts                                                                                      

Query      401 KREKPQGFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISGLIVQWDGNGNRLRDVNHHHRP 480 
WD40-rpts                                                                         (____________

Query      481 VLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQ 560 
WD40-rpts      ____WD 3_______________)                                                        

Query      561 KETLYARQDNVRILIGTWNVGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWID 640 
WD40-rpts                                                                                      

Query      641 AIGKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGVGLRIRVYDRIMCFVNCHLAAH 720 
WD40-rpts                                                                                      

Query      721 LEAVNRRNADFNHIFRLMVFSRGQNLSNAAAGMVPYLFLSCSLGFSTYLFWLLYSSGLPWALSLAAGVSTSAYTTKSNTI 800 
WD40-rpts                                                                                      

Query      801 PSTGAEEIKSDLAAADMVAFFGDFNYRLFGITYDEARDFISQRSFDWLRERDQLRAEMKVGKVFQGMREALITFPPTYKF 880 
WD40-rpts                                                                                      

Query      881 ERNRSGLGGYDSGEKKRIPAWCDRVIYRDTQSSPFSESNLQCPVVSSVIMYEACMDVTESDHKPVRCKFHATIAHVDKSV 960 
WD40-rpts                                                                                      

Query      961 RRQELGKIIRSNEKILSIFEDLRFVPETSVSTNNIVLQSQDTVILTITNNSPTSQAIFNILCGGQAVVKDDGEDADYNPR 1040
WD40-rpts                                                                                      

Query     1041 GSFGLPRWLEVSPAAGIINPEGSVDVKVHHEDFYSMEEYVDGIPQNWWCEDTRDKEAILMVNIRGSCSTTLRSHSVKVRH 1120
WD40-rpts                                                                                      

Query     1121 CFSARVCLLENRPTNLTKNLGGSRRYPTDITRNGSTRPRTEDSVRRGKSR 1170
WD40-rpts                                                        

3 WD40-repeats found in QUERY=AT1G05630.1 (Len=1170):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   167-235      3.78  270.73  0.01391       22.5%     45.49
  WD 2:  Seg 10   251-288      3.60  263.45  0.01740       30.0%     39.36
  WD 3:  Seg 24   468-504      3.11  243.31  0.03227       32.5%     42.24

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  167-235    GQENGIRFWNLEDAYEAGCGIGGQVPRGDEDTAPFHESVTTSPTMCLVADQSNKLLWSGHKDGKIRAWK
   WD 2  251-288    -FKERVSWLAHRG-----------------------------PVNSIVISSYGD-MWSCSEGGVIKIWP
   WD 3  468-504    -GNRLRDVNHHHR-----------------------------PVLC--FCTFGDRIYVGYASGYIQVLD

   WD40 Template    TGECLRTLSGHTS-----------------------------GVTSVSFSPDGKRLVSGSEDGTIKVWD