Input parameters:

  Query = AT1G05630.2 (Len=1136)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G05630.2, Len=1136):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSLIIEEEDEEALATLVPVPPRRKTHSYSLQFDHKPHHQIRKHSLDEVPRSATLASEAVYFDSSDDEFSTGGNITENAA 80  
WD40-rpts                                                                                      

Query       81 DETNAGAEEYTIVNPPPNVGLGDDDTEPLPEFIGAGGGSGIFKVPVRAAVHPGRPPCLELRPHPLRETQTGRFLRNIACT 160 
WD40-rpts                                                                                      

Query      161 ETQLWAGQENGIRFWNLEDAYEAGCGIGGQVPRGDEDTAPFHESVTTSPTMCLVADQSNKLLWSGHKDGKIRAWKMDQSS 240 
WD40-rpts                      (___________________________WD 1__________________________)     

Query      241 VSHDDDDSDPFKERVSWLAHRGPVNSIVISSYGDMWSCSEGGVIKIWPWDTLEKSLLLKPEEKHMAALLVERSAIDLRSQ 320 
WD40-rpts                  (_______________WD 2_______________)                                

Query      321 VTVNGTCSISSSEVKFLLADSVRAKVWAVQSLSFSIWDARSKDLLKVLNVDGQVENRGDLPPIQDQQVDDEMKLKFFSAS 400 
WD40-rpts                                                                                      

Query      401 KREKPQGFLQRSRNAIMGAAGAVRRVATRSAGAFSEDTRKTEAIVLAVDGTIWTGSISGLIVQWDGNGNRLRDVNHHHRP 480 
WD40-rpts                                                                                      

Query      481 VLCFCTFGDRIYVGYASGYIQVLDLDGKLISSWVSHNEPVIKLAAGGGFIFSLATHGGVRGWYVTSPGPLDNIIRTELSQ 560 
WD40-rpts                                                                                      

Query      561 KETLYARQDNVRILIGTWNVGQGRASHDALMSWLGSVTSDVGIVAVGLQEVEMGAGFLAMSAAKETVGLEGSAVGQWWID 640 
WD40-rpts                                                                                      

Query      641 AIGKALDEKNTFERMGSRQLAGLLISLWARKDIRTHVGDLDVAAVPCGFGRAIGNKGGVGLRIRVYDRIMCFVNCHLAAH 720 
WD40-rpts                                                                                      

Query      721 LEAVNRRNADFNHIFRLMVFSRGQNLSNAAAAGVSTSAYTTKSNTIPSTGAEEIKSDLAAADMVAFFGDFNYRLFGITYD 800 
WD40-rpts                                                                                      

Query      801 EARDFISQRSFDWLRERDQLRAEMKVGKVFQGMREALITFPPTYKFERNRSGLGGYDSGEKKRIPAWCDRVIYRDTQSSP 880 
WD40-rpts                                                                                      

Query      881 FSESNLQCPVVSSVIMYEACMDVTESDHKPVRCKFHATIAHVDKSVRRQELGKIIRSNEKILSIFEDLRFVPETSVSTNN 960 
WD40-rpts                                                                                      

Query      961 IVLQSQDTVILTITNNSPTSQAIFNILCGGQAVVKDDGEDADYNPRGSFGLPRWLEVSPAAGIINPEGSVDVKVHHEDFY 1040
WD40-rpts                                                                                      

Query     1041 SMEEYVDGIPQNWWCEDTRDKEAILMVNIRGSCSTTLRSHSVKVRHCFSARVCLLENRPTNLTKNLGGSRRYPTDITRNG 1120
WD40-rpts                                                                                      

Query     1121 STRPRTEDSVRRGKSR 1136
WD40-rpts                      

2 WD40-repeats found in QUERY=AT1G05630.2 (Len=1136):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   177-235      2.83  231.46  0.04628       27.5%     44.67
  WD 2:  Seg  9   253-288      3.43  256.46  0.02157       30.0%     41.14

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  177-235    LEDAYEAGCGIGGQVPRGDEDTAPFHESVTTSPTMCLVADQSNKLLWSGHKDGKIRAWK
   WD 2  253-288    ER---VSWLA-------------------HRGPVNSIVISSYGD-MWSCSEGGVIKIWP

   WD40 Template    TGECLRTLSG-------------------HTSGVTSVSFSPDGKRLVSGSEDGTIKVWD