Input parameters:
Query = AT1G06220.1 (Len=987)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G06220.1, Len=987):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MESSLYDEFGNYVGPEIESDRDSDDEVEDEDLQDKHLEENGSDGEQGPGGSNGWITTINDVEMENQIVLPEDKKYYPTAE 80
WD40-rpts
Query 81 EVYGEDVETLVMDEDEQPLEQPIIKPVRDIRFEVGVKDQATYVSTQFLIGLMSNPALVRNVALVGHLQHGKTVFMDMLVE 160
WD40-rpts
Query 161 QTHHMSTFNAKNEKHMKYTDTRVDEQERNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIV 240
WD40-rpts (____________________________WD 1_____
Query 241 DAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGDLPLIDPAAGNV 320
WD40-rpts _______________________)
Query 321 CFASGTAGWSFTLQSFAKMYAKLHGVAMDVDKFASRLWGDVYYHSDTRVFKRSPPVGGGERAFVQFILEPLYKIYSQVIG 400
WD40-rpts
Query 401 EHKKSVETTLAELGVTLSNSAYKLNVRPLLRLACSSVFGSASGFTDMLVKHIPSPREAAARKVDHSYTGTKDSPIYESMV 480
WD40-rpts
Query 481 ECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPP 560
WD40-rpts
Query 561 GSWVLIEGVDASIMKTATLCNASYDEDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGE 640
WD40-rpts
Query 641 HTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS 720
WD40-rpts
Query 721 IDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDRNLMMAVKDSIVQGFQWGAREGPLCDEPIRN 800
WD40-rpts
Query 801 VKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGT 880
WD40-rpts
Query 881 PAYIVKAFLPVIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEPAPIQHLAREFMVKTRRRKGMSED 960
WD40-rpts
Query 961 VSGNKFFDEAMMVELAQQTGDLHLQMI 987
WD40-rpts
1 WD40-repeats found in QUERY=AT1G06220.1 (Len=987):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 203-264 3.08 241.82 0.03377 20.0% 2.38
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 203-264 DSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHLPI
WD40 Template TGECLRTLSGHTSGVTSVSFS---------PDGKRLVSGSEDGTI-------------KVWD