Accession: AT1G06490.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT1G06490.1 (Len=1958)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G06490.1, Len=1958):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASTSSGGRGEDGRPPQMQPVRSMSRKMTRAGTMMIEHPNEDERPIDSELVPSSLASIAPILRVANDIDQDNARVAYLCR 80  
WD40-rpts                                                                                      

Query       81 FHAFEKAHRMDPTSSGRGVRQFKTYLLHKLEEEEEITEHMLAKSDPREIQLYYQTFYENNIQDGEGKKTPEEMAKLYQIA 160 
WD40-rpts                                                                                      

Query      161 TVLYDVLKTVVPQARIDDKTLRYAKEVERKKEQYEHYNILPLYALGAKTAVMELPEIKAAILAVCNVDNLPRPRFHSASA 240 
WD40-rpts                                                                                      

Query      241 NLDEVDRERGRSFNDILEWLALVFGFQRGNVANQREHLILLLANIDVRKRDLENYVEIKPSTVRKLMEKYFKNYNSWCKY 320 
WD40-rpts                                                                                      

Query      321 LRCDSYLRFPAGCDKQQLSLLYIGLYLLIWGEASNVRFMPECLCYIFHNMANEVHGILFGNVYPVTGDTYEAGAPDEEAF 400 
WD40-rpts                                                                                      

Query      401 LRNVITPIYQVLRKEVRRNKNGKASHSKWRNYDDLNEYFWDKRCFRLKWPMNFKADFFIHTDEISQVPNQRHDQVSHGKR 480 
WD40-rpts                                                                                      

Query      481 KPKTNFVEARTFWNLYRSFDRMWMFLVLSLQTMIIVAWHPSGSILAIFTEDVFRNVLTIFITSAFLNLLQATLDLVLSFG 560 
WD40-rpts                                                                                      

Query      561 AWKSLKFSQIMRYITKFLMAAMWAIMLPITYSKSVQNPTGLIKFFSSWVGSWLHRSLYDYAIALYVLPNILAAVFFLLPP 640 
WD40-rpts                                                                                      

Query      641 LRRIMERSNMRIVTLIMWWAQPKLYIGRGMHEEMFALFKYTFFWVMLLLSKLAFSYYVEILPLVNPTKLIWDMHVVNYEW 720 
WD40-rpts                                                                                      

Query      721 HEFFPNATHNIGVIIAIWGPIVLVYFMDTQIWYAIFSTLFGGIYGAFSHLGEIRTLGMLRSRFKVVPSAFCSKLTPLPLG 800 
WD40-rpts                                                                                      

Query      801 HAKRKHLDETVDEKDIARFSQMWNKFIHTMRDEDLISDRERDLLLVPSSSGDVTVVQWPPFLLASKIPIALDMAKDFKGK 880 
WD40-rpts                                                                                      

Query      881 EDVDLFKKIKSEYYMHYAVVEAYETVRDIIYGLLQDESDKRIVREICYEVDISIQQHRFLSEFRMTGMPLLSDKLEKFLK 960 
WD40-rpts                                                                                      

Query      961 ILLSDYEEDDYKSQIINVLQDIIEIITQDVMVNGHEILERAHLQSGDIESDKKEQRFEKIDLSLTQNISWREKVVRLLLL 1040
WD40-rpts                                                                                      

Query     1041 LTVKESAINIPQSLEARRRMTFFANSLFMNMPDAPRVRDMLSFSVLTPYYKEDVLYSEEELNKENEDGITILFYLQRIYP 1120
WD40-rpts                                                                                      

Query     1121 EEWSNYCERVNDLKRNLSEKDKAEQLRQWVSYRGQTLSRTVRGMMYYRVALELQCFQEYTEENATNGGYLPSESNEDDRK 1200
WD40-rpts                                                                                      

Query     1201 AFSDRARALADLKFTYVVSCQVYGNQKKSSESRDRSCYNNILQLMLKYPSLRVAYIDEREETVNGKSQKVFYSVLLKGCD 1280
WD40-rpts                                                                                      

Query     1281 KLDEEIYRIKLPGPPTEIGEGKPENQNHAIIFTRGEALQTIDMNQDNYFEECFKMRNVLQEFDEGRRGKRNPTILGLREH 1360
WD40-rpts                                                                                      

Query     1361 IFTGSVSSLAWFMSNQETSFVTIGQRVLANPLRVRFHYGHPDIFDRIFHITRGGISKASKIINLSEDIFAGYNSTLRGGY 1440
WD40-rpts                                                                                      

Query     1441 VTHHEYIQAGKGRDVGMNQISFFEAKVANGNGEQTLSRDVYRLGRRFDFYRMLSFYFTTVGFYFSSMITVLTVYVFLYGR 1520
WD40-rpts                                                                                      

Query     1521 LYLVLSGLEKNILQSASVHESNALEQALAAQSVFQLGFLMVLPMVMEIGLEKGFRTALGDFIIMQLQLASVFFTFQLGTK 1600
WD40-rpts                                                                                      

Query     1601 AHYFGRTILHGGSKYRATGRGFVVFHAKFAENYRLYSRSHFVKGLELVILLVVYQVYGTSYRSSSTYMYITFSMWFLVTS 1680
WD40-rpts                       (________________________________________________WD 1__________

Query     1681 WLFAPFIFNPSGFEWQKTVDDWTDWKRWMGNRGGIGIVLDKSWESWWDIEQEHLKHTNLRGRVLEILLALRFLLYQYGIV 1760
WD40-rpts      ______________________________________)                                         

Query     1761 YHLNIARRHTTFLVYGLSWAILLSVLLVLKMVSMGRRKFGTDFQVMFRILKALLFLGFLSVMTVLFVVCGLTISDLFASI 1840
WD40-rpts                                                                                      

Query     1841 LAFLPTGWAILLIGQALRSVFKGLGFWDSVKELGRAYEYIMGLVIFTPIAVLSWFPFVSEFQTRLLFNQAFSRGLQISMI 1920
WD40-rpts                                                                                      

Query     1921 LAGKKDKETPSTKYLGHTEESFGLEHDTNTFNHYYLWT 1958
WD40-rpts

1 WD40-repeats found in QUERY=AT1G06490.1 (Len=1958):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 17  1618-1719     3.44  256.76  0.02137       30.0%     15.89

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1618-1719   TGRGFVVFHAKFAENYRLYSRSHFVKGLELVILLVVYQVYGTSYRSSSTYMYITFSMWFLVTSWLFAPFIFNPSGFEWQKTVDDWTDWKRWMGNRGGIGIVL

   WD40 Template    TGECLRTLSG------------H------------------TSGVTSV---------------------SFSPDGKRLVSGSED-----------GTIKVWD