Input parameters:

  Query = AT1G08190.1 (Len=980)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G08190.1, Len=980):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAVPPENGVDGDDEREEEEEDEEEEEEEEEEENGDEAEEEPRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGT 80  
WD40-rpts                                                      (________________WD 1___________

Query       81 VRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFV 160 
WD40-rpts      ____)  (_________________WD 2________________)(____________________WD 3_________

Query      161 AGGLAGHLYMNSKKWFGNKDQVLHSGEGPIHSVKWRGSLIAWANDVGVKVYDTAKDQRVTFIEKPRGSPRPEALLPHLVW 240 
WD40-rpts      ___________)    (_______________WD 4_______________)                            

Query      241 QDDTLLVIGWGTSVKIASIKSDQQQTGTFRQIQMSSLTQVDIVASFQTSYYISGIAPFGDSLVILAYIPIEGDGEKEFSS 320 
WD40-rpts                                                                                      

Query      321 TTTLSRQGNAQRPEIRIVSWNNDELTMDALPVHGFEHYKAKDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAK 400 
WD40-rpts                                                                                      

Query      401 PRDAEDHINWLLQHGFHEKALAAVEASEGRTELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLR 480 
WD40-rpts                                                                                      

Query      481 QLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSAVKSWPRSVYSALTVISAIEPQLNTSSMTDALKEALAELY 560 
WD40-rpts                                                                                      

Query      561 VIDGQYQKAFSLYADLLKPEVFDFIEKYSLHEAIRGKVVQLMLLDCKRATVLFIQNRDLIPPSEVVPQLLKAGKNPQVLK 640 
WD40-rpts                                                                                      

Query      641 AGKKCDSRYYLYLYLHALFEVSHDTGKDFHDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDFLREQVFVLGRM 720 
WD40-rpts                                                                                      

Query      721 GNAKQALAVIINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRL 800 
WD40-rpts                                                                                      

Query      801 VKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKS 880 
WD40-rpts                                                                                      

Query      881 KTRGDTRCCMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYDNGVDEEEEDEEEDEDGDGDR 960 
WD40-rpts                                                                                      

Query      961 PGRSRLRCILCTTAAAASAR 980 
WD40-rpts                          

4 WD40-repeats found in QUERY=AT1G08190.1 (Len=980):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    49-85       3.55  261.43  0.01851       20.0%     36.12
  WD 2:  Seg  5    88-126      7.76  435.12  8.5e-05       25.0%     54.04
  WD 3:  Seg  9   127-172      2.95  236.60  0.03959       20.0%     50.37
  WD 4:  Seg 13   177-212      3.91  276.23  0.01174       22.5%     50.25

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   49-85     MGGNVPAL----LSNDAASCIAVA-----ARMIALGTHDGTVRILD
   WD 2   88-126    -GNQVKEFR-AHTAPVNDINFDTE-----GEYIGSCSDDGSVVINS
   WD 3  127-172    LFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNS
   WD 4  177-212    -GNKDQVLH-SGEGPIHSVKWRGS--------LIAWANDVGVKVYD

   WD40 Template    TGECLRTLS-GHTSGVTSVSFSPD-----GKRLVSGSEDGTIKVWD