Input parameters:

  Query = AT1G08470.1 (Len=390)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G08470.1, Len=390):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMSILAKIFLVFAIYCAIDPFSHSSISKFPDFKTYKIDMPPLSSLPKERDRQNLLQNSEIRFLNEVQGPESIAFDPQGR 80  
WD40-rpts                                                            (__________________WD 1___

Query       81 GPYTGVADGRILFWNGTRWTDFAYTSNNRSELCDPKPSLLDYLKDEDICGRPLGLRFDKKNGDLYIADAYLGIMKVGPEG 160 
WD40-rpts      ______________)                                                                 

Query      161 GLATSVTNEADGVPLRFTNDLDIDDEGNVYFTDSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLS 240 
WD40-rpts                                                                                      

Query      241 LGKDGSFFIFCEGSIGRLRKYWLKGEKAGTSEVVALLHGFPDNIRTNKDGDFWVAVHCHRNIFTHLMAHYPRVRKFFLKL 320 
WD40-rpts                                                                                      

Query      321 PISVKFQYLLQVGGWPHAVAVKYSEEGKVLKVLEDSKGKVVKAVSEVEEKDGKLWMGSVLMSFIAVYDLP 390 
WD40-rpts                                                                            

1 WD40-repeats found in QUERY=AT1G08470.1 (Len=390):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    55-95       3.12  243.72  0.03187       25.0%     41.43

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   55-95     LLQNSEIRFLNEVQGPESIAFDPQGRGPYTGVADGRILFWN

   WD40 Template    TGECLRT-LSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD