Input parameters:

  Query = AT1G08520.1 (Len=760)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G08520.1, Len=760):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAMTPVASSSPVSTCRLFRCNLLPDLLPKPLFLSLPKRNRIASCRFTVRASANATVESPNGVPASTSDTDTETDTTSYGR 80  
WD40-rpts                                                                                      

Query       81 QFFPLAAVVGQEGIKTALLLGAVDREIGGIAISGRRGTAKTVMARGLHEILPPIEVVVGSISNADPACPDEWEDDLDERI 160 
WD40-rpts                                                                                      

Query      161 EYNADNTIKTEIVKSPFIQIPLGVTEDRLIGSVDVEESVKRGTTVFQPGLLAEAHRGVLYVDEINLLDEGISNLLLNVLT 240 
WD40-rpts                                                                                      

Query      241 DGVNIVEREGISFRHPCKPLLIATYNPEEGAVREHLLDRVAINLSADLPMSFEDRVAAVGIATQFQERCNEVFRMVNEET 320 
WD40-rpts                                                                                      

Query      321 ETAKTQIILAREYLKDVKISREQLKYLVLEAVRGGVQGHRAELYAARVAKCLAAIEGREKVTIDDLRKAVELVILPRSSL 400 
WD40-rpts                                                                                      

Query      401 DETPPEQQNQPPPPPPPPQNSESGEEENEEEQEEEEEDESNEENENEQQQDQIPEEFIFDAEGGLVDEKLLFFAQQAQKR 480 
WD40-rpts                                                                                      

Query      481 RGKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRREKDISGTRKVFVEKTDMRAKRMARKAGALVI 560 
WD40-rpts                                                                                      

Query      561 FVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTA 640 
WD40-rpts                                              (________________________________WD 1___

Query      641 VRVGLNAEKSGDVGRIMIVAITDGRANITLKRSTDPESIAPDAPRPTSKELKDEILEVAGKIYKAGMSLLVIDTENKFVS 720 
WD40-rpts      _____________________________)                                                  

Query      721 TGFAKEIARVAQGKYYYLPNASDAVISATTRDALSDLKNS 760 
WD40-rpts                                              

1 WD40-repeats found in QUERY=AT1G08520.1 (Len=760):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   601-670      3.02  239.36  0.03641       17.5%      6.90

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  601-670    RGDAAEVLLPPSRSIAMARNRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANITL

   WD40 Template    TGECLRTLSGHTSG----------VTSVSFSP--------------------DGKRLVSGSEDGTIKVWD