Input parameters:
Query = AT1G09400.1 (Len=324)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G09400.1, Len=324):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKNFNLTHRIVMAPMARMRSYGNIPQPHVALYYCQRTTPGGLLISEATGVSETAMAYQNMPGIWRKEQIEAWKPIVDAVH 80
WD40-rpts
Query 81 SHGGIFFCQLWHAGRVSHQDCQPNGESPVSSTDKPFADDPSNEFTPPRRLRTDEIPTIINDFRLAARNATEAGFDGVEIH 160
WD40-rpts (_________________WD 1_________________)
Query 161 GAHGYLIDQFMKDSVNDRTDSYGGSLENRCRFALQVIEAVSKEIGPDRVGIRLSPFADYMESGDTDPKRLGLYMAKSLNR 240
WD40-rpts
Query 241 FEILYCHMIEPRMKTVSEIFECRESLTPMRNAFNGTFIVAGGYTREDGNKAVAEGRTDLVAYGRLFLANPDLPKRFELNA 320
WD40-rpts
Query 321 PLNK 324
WD40-rpts
1 WD40-repeats found in QUERY=AT1G09400.1 (Len=324):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 82-121 3.17 245.65 0.03005 17.5% -7.04
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 82-121 HGGIFFCQLWHAGRVSHQDCQPNGESPVSSTDKPFADDPS
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD