Input parameters:
Query = AT1G09910.1 (Len=675)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G09910.1, Len=675):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MKKLADRLLHRFTNHETALNAGHHCSEGTDQGTSGLSHRKDHRMSSHGVHLHVHDRYVVMDNGILQVTLSKPGGIITGIE 80
WD40-rpts (_________________W
Query 81 YNGIDNVLEVRNKETNRGYWDLHWNEPGGKGIFDVISGVTFRVIVETEEQVEISFLRTWDPSLEGKYIPLNIDKRFIMLR 160
WD40-rpts D 1_________________)
Query 161 GSSGVYSYGIYEHLKDWPGFELGETRIAFKLRKDKFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPRLQ 240
WD40-rpts
Query 241 GEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHSTHYAGKTMMPRFEHGEP 320
WD40-rpts
Query 321 WKKVYGPVFIYLNSTANGDDPLCLWDDAKIKMMAEVERWPYSFVASDDYPKSEERGTARGRLLIRDRFINNDLISARGAY 400
WD40-rpts
Query 401 VGLAPPGDSGSWQIECKGYQFWAIADEAGYFSIGNVRPGEYNLYAWVPSFIGDYHNGTIVRVTSGCMIEMGDIVYEPPRD 480
WD40-rpts
Query 481 GPTLWEIGIPDRKASEFFIPDPDPTLVNRVLVHHQDRFRQYGLWKKYTDMYPNDDLVYTVGVSDYRRDWFFAHVPRKKGD 560
WD40-rpts
Query 561 VHEGTTWQIIFNLENIDQKANYKLRVAIASATLAELQIRINDAEAIRPLFTTGLIGRDNSIARHGIHGVYMLYAVNIPGN 640
WD40-rpts
Query 641 RLVQGDNTIFLKQPRCNGPFQGIMYDYIRLEGPPS 675
WD40-rpts
1 WD40-repeats found in QUERY=AT1G09910.1 (Len=675):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 3 62-101 3.20 246.68 0.02911 20.0% 30.99
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 62-101 NGILQVTLSKPGGIITGIEYNGIDNVLEVRNKETNRGYWD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD