Input parameters:

  Query = AT1G10580.1 (Len=573)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G10580.1, Len=573):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLIQSYEEEDEAVASSPESSPPRMLKAKSSAPEVDDTALALTVANVNQSKSKPIDPTQHVVFYNPTHDQLWAPMFGPAH 80  
WD40-rpts                                                                                      

Query       81 PYAKDGIAQGMRNHKLGSVEDASIGSFGFEEQYHTFHKCGYAADPSGMNYVGDVEAFKKNDGLSVFNIPQSEQKRRKIER 160 
WD40-rpts                                                                                      

Query      161 SKEEREGEEKKEEIEPEAENPETEAWLRKNRKSPWSRKKEVVQGELTEEQKKYAEDHAKKKEEKGQQGETKGEHYADKST 240 
WD40-rpts                                                                     (_____________WD 

Query      241 FHGKEEKDYQGRSWIEAPKDAKANNDHCYIPKRLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMR 320 
WD40-rpts      1_____________)                (_________________WD 2_________________)    (____

Query      321 TYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDIN 400 
WD40-rpts      _____________WD 3________________)   (__________________WD 4_________________)  

Query      401 TGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISVHPNGNWLAAQSLDNQIL 480 
WD40-rpts       (_________________WD 5________________)(___________________WD 6________________

Query      481 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHNGVCIGAEWHPLEQSKV 560 
WD40-rpts      __)            (_______________WD 7______________)   (_________________WD 8_____

Query      561 ATCGWDGLIKYWD 573 
WD40-rpts      ____________)

8 WD40-repeats found in QUERY=AT1G10580.1 (Len=573):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   224-255      4.56  303.11  0.00511        7.5%     38.31
  WD 2:  Seg  8   272-311      7.95  442.97  6.7e-05       40.0%     55.34
  WD 3:  Seg 12   316-354     10.20  535.83  3.7e-06       40.0%     56.68
  WD 4:  Seg 16   358-398      5.70  349.93  0.00120       30.0%     49.62
  WD 5:  Seg 20   402-440      9.30  498.68  1.2e-05       27.5%     56.93
  WD 6:  Seg 24   441-483      7.10  407.96  0.00020       25.0%     49.52
  WD 7:  Seg 28   496-530      6.60  387.19  0.00038       32.5%     45.95
  WD 8:  Seg 31   534-573      7.27  414.96  0.00016       27.5%     53.17

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  224-255    -----------K-GQQGE--TKGEHYAD-KSTF-HGKEEKDYQGRSWI
   WD 2  272-311    -K---RLVHTWS-GHTKG--VSAIRFFPKQGHL-LLSAGMDCKVKIWD
   WD 3  316-354    -G---KCMRTYM-GHAKA--VRDICFSN-DGSK-FLTAGYDKNIKYWD
   WD 4  358-398    -G---QVISTFSTGKIPY--VVKLNPDD-DKQNILLAGMSDKKIVQWD
   WD 5  402-440    -G---EVTQEYD-QHLGA--VNTITFVD-NNRR-FVTSSDDKSLRVWE
   WD 6  441-483    FGIPVVIKYISE-PHMHS--MPSISVHP-NGNW-LAAQSLDNQILIYS
   WD 7  496-530    ----------FA-GHIVAGYACQVNFSP-DGRF-VMSGDGEGKCWFWD
   WD 8  534-573    -C---KVFRTLK-CHNGV--CIGAEWHPLEQSK-VATCGWDGLIKYWD

   WD40 Template    TG---ECLRTLS-GHTSG--VTSVSFSP-DGKR-LVSGSEDGTIKVWD