Input parameters:
Query = AT1G10830.2 (Len=285)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G10830.2, Len=285):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAVYHLLLSSPPSLLLLPPSPRRPNLTLIRRIPAHPRLGNSTSLLSSSSPVIRKILVRSTLREDQPIASDSESSPTLLIG 80
WD40-rpts
Query 81 EDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDI 160
WD40-rpts (__________________________________________________________WD 1_________________
Query 161 GEKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDGSQLWQLQGVPGVHEAIWVANFVSFFFLYPSTFNLLEVAAVDKPK 240
WD40-rpts ________________________________________)
Query 241 MHLWETGIMRITRHPQVLNISLMCLNMKTISFIFVFQKYRKIGFL 285
WD40-rpts
1 WD40-repeats found in QUERY=AT1G10830.2 (Len=285):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 4 81-201 2.90 234.65 0.04202 22.5% 20.34
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 81-201 EDSAAFELGKQKLVSWVYFGVVLGVVLFILNVVWIDNSTGFGKSFIDAVSNISGSPEVAMLMLILIFAIVHSGLASLRDIGEKLIGERAFRVLFAGISLPLAMSTIVYFINHRYDG-SQLWQ
WD40 Template TGECLRTLSGHTSG-----------------VTSVSFSPDGK------------R------------------LVSG--------------------SE---------------DGTIKVWD