Input parameters:

  Query = AT1G11160.1 (Len=1021)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G11160.1, Len=1021):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKRGYKLQEFVAHSGNVNCLSIGKKTSRLLLTGGDDYKVNLWSIGKTTSPMSLCGHTSPVDSVAFNSEEVLVLAGASSG 80  
WD40-rpts         (__________________WD 1_________________)   (_________________WD 2___________

Query       81 VIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSG 160 
WD40-rpts      _____)   (_________________WD 3________________)   (_________________WD 4_______

Query      161 GLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDGQT 240 
WD40-rpts      _________)   (_________________WD 5________________)   (________________WD 6____

Query      241 LFCGLDDGLKVYSWEPVICRDGVDMGWSTLGDFCINEGKFIGCSYYRNSVGIWVSDISELEPYGAVSEDKNECMVKRFSV 320 
WD40-rpts      ____________)   (________________WD 7________________)   (__________________WD 8

Query      321 LNDQSERMGSGPRGSVSPDYETREIKNIYVDSTGGNLNVAQNPGSLKATLPLESGKVATMVSEKQNAAYFGPAGDKYSST 400 
WD40-rpts      __________________)   (________________WD 9________________)   (________________

Query      401 SRDSDSGEESSYSERESIPFSRTKSGMLLRPAHVRKTLAKFEESKQSAVVQSATRKKSGLAVEEEPQTQNAFLSEQNASK 480 
WD40-rpts      _WD10________________)                                                          

Query      481 PFDAEDSIIKGITNKFEKALSSEPPTDEANRMFLKPPRIHRSSNSKYNDTRRAMSADPATFGKGGMENSGDVEDIPSKTE 560 
WD40-rpts                                                                                      

Query      561 RVLSREKPGDEQKNTEYPSGSRELNPVKIVEGVNVVSGRTRSLVEKFERGEKTTHTEGASTTIEQNNNAVQEDPRKTSRQ 640 
WD40-rpts                                                                                      

Query      641 TGETPVISTRRARSTPARVMPIVLNRDSNVTSDEPPLTQPARTSSFPVMPVILNQASNVTYDEPSVALTQESRTSHARIL 720 
WD40-rpts                                                                                      

Query      721 PVTFNQATNITSEEASVTLRRQRRNSAARVRPVLLSQATSHECPVTSVRPLRTSPARVMPTKLNQSVNMTSDTSHIASMH 800 
WD40-rpts                                                                                      

Query      801 RVSPTQMLATPTVIDQVADMTLDETHATQIQPACDNMPQKEEPNISDREDDSDITENLMLTHNEFLSTLQSRLTKLQIVR 880 
WD40-rpts                                                                                      

Query      881 HFWERSDVKGAIGALRKLTDQSVQADVISILTEKIEILTLDMFSQLVPVLTSLLGSRTERPVNVSLDMLLKLVAVFGTVI 960 
WD40-rpts                                                                                      

Query      961 RSTVSAPRIVGVDLHANERLEICQICSAGLHKIQRILPVLARRGGLITRKAQELNLVLQEP 1021
WD40-rpts                                                                   

10 WD40-repeats found in QUERY=AT1G11160.1 (Len=1021):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.74  434.31  8.7e-05       22.5%     54.63
  WD 2:  Seg  5    48-86       9.55  508.95  8.6e-06       37.5%     53.59
  WD 3:  Seg  9    90-128     10.13  533.23  4.0e-06       40.0%     53.47
  WD 4:  Seg 13   132-170     11.04  570.61  1.3e-06       47.5%     54.90
  WD 5:  Seg 17   174-212      9.59  510.73  8.1e-06       35.0%     55.80
  WD 6:  Seg 21   216-253      7.34  417.74  0.00015       35.0%     54.89
  WD 7:  Seg 25   257-294      5.45  339.74  0.00164       12.5%     52.87
  WD 8:  Seg 29   298-339      4.48  299.86  0.00565       10.0%     38.54
  WD 9:  Seg 32   343-380      4.55  302.70  0.00518       12.5%     50.03
  WD10:  Seg 36   384-422      7.30  416.05  0.00015       17.5%     43.45

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     RGYKLQEFVAHSGNVNCLSIGK---KTSRLLLTGGDDYKVNLWS
   WD 2   48-86     -TTSPMSLCGHTSPVDSVAFNS---E-EVLVLAGASSGVIKLWD
   WD 3   90-128    -SKMVRAFTGHRSNCSAVEFHP---F-GEFLASGSSDTNLRVWD
   WD 4  132-170    -KGCIQTYKGHTRGISTIEFSP---D-GRWVVSGGLDNVVKVWD
   WD 5  174-212    -GKLLHEFKCHEGPIRSLDFHP---L-EFLLATGSADRTVKFWD
   WD 6  216-253    -FELIGTTRPEATGVRAIAFHP---D-GQTLFCGLDDG-LKVYS
   WD 7  257-294    -VICRDGVDMGWSTLGDFCIN----E-GKFIGCSYYRNSVGIWV
   WD 8  298-339    -SELEPYGAVSEDKNECMVKRFSVLN-DQSERMGSGPRGSVSPD
   WD 9  343-380    -REIKNIYVDSTGGNLNV-AQN---P-GSLKATLPLESGKVATM
   WD10  384-422    -KQNAAYFGPAGDKYSSTSRDS---D-SGEESSYSERESIPFSR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP---D-GKRLVSGSEDGTIKVWD