Input parameters:
Query = AT1G12580.1 (Len=522)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G12580.1, Len=522):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGMDIADKENTSPLLFEFCNCYKVASLTETILNPVNVSNLKDRYVLGEQLGWGQFGVIRVCSDKLTGERLACKSISKDRL 80
WD40-rpts
Query 81 VTQDDMKSIKLEIAIMAKLAGHPNVVNLKAVYEEKDSVHLVMELCAGGELFHKLEKYGRYSEVRARVLFKHLMQVVKFCH 160
WD40-rpts (___________________________________WD 1______
Query 161 DSGIVHRDLKPENILMATMSSSSPIKLADFGLATYIKPGEKLSGTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSG 240
WD40-rpts ____________________________)
Query 241 APPFWGKTKSKIFDAVRAADLRFSAEPWDNITSYAKDLIRGMLCVDPSQRLSADEVLAHSWMEQLSESGQEQYDQDGFGC 320
WD40-rpts
Query 321 EGLENGGCSFSTQCVSREQDYSFSVGQLEQSTDNDFKSSFSTFLPADNTLPNSGFDGFSFDGKQPESTTAGFSSTGIPSM 400
WD40-rpts
Query 401 PSFTFFCTSPARTQNNDITEIDGKVRDSSPKRLLPSPDSSSQLERRDEAGENQTEAGGKSETRRERGNWSRMSGLHSKRN 480
WD40-rpts
Query 481 RTIGLGELDQLVVDVAVTESIIRWASCTHIPTAPSLRLSLVC 522
WD40-rpts
1 WD40-repeats found in QUERY=AT1G12580.1 (Len=522):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 115-189 3.01 238.90 0.03692 15.0% 18.37
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 115-189 KDSVHLVMELCAGGELFHKLEKYGRYSEVRARVLFKHLMQVVKFCHDSGIVHRDLKPENILMATMSSSSPIKLAD
WD40 Template TGECLRTLSGHTSG-----------------------------------VTSVSFSPDGKRLVSGSEDGTIKVWD