Input parameters:

  Query = AT1G12910.1 (Len=346)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G12910.1, Len=346):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGTSSDPIQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAITSLLEQYPNRVEIVQLDESNGEIRSDPNLSFEH 80  
WD40-rpts                                                                             (________

Query       81 PYPPTKTIFIPDKECQRPDLLATSSDFLRLWRIADDHSRVELKSCLNSNKNSEFCGPLTSFDWNEAEPRRIGTSSTDTTC 160 
WD40-rpts      __________WD 1_________________)             (_________________WD 2_____________

Query      161 TIWDIEREAVDTQLIAHDKEVFDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMAT 240 
WD40-rpts      ___)   (________________WD 3________________)      (__________________WD 4______

Query      241 IIMDSAKVVVLDIRFPALPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEI 320 
WD40-rpts      ___________)    (_________________WD 5_________________)          (_____________

Query      321 EQLQWSSSQPDWVAIAFSTKLQILRV 346 
WD40-rpts      ____WD 6________________) 

6 WD40-repeats found in QUERY=AT1G12910.1 (Len=346):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    72-112      2.83  231.36  0.04644       15.0%     28.62
  WD 2:  Seg 10   126-164      5.40  337.84  0.00174       22.5%     38.72
  WD 3:  Seg 13   168-205      6.23  371.94  0.00060       25.0%     49.05
  WD 4:  Seg 17   212-252      3.50  259.42  0.01969       12.5%     49.91
  WD 5:  Seg 21   257-296      6.66  389.66  0.00035       17.5%     47.58
  WD 6:  Seg 25   307-345      3.61  263.86  0.01718        7.5%     45.18

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   72-112    --SDPNLSFEHPYPPTKTIFIP-DKE-CQRPDLLATSSDF-LRLWR
   WD 2  126-164    LNS--NKNSEFCGPLTSFDWNEAEPR-RI---GTSSTDTT-CTIWD
   WD 3  168-205    -EAVDTQLIAHDKEVFDIAWGG-VG--VF---ASVSADGS-VRVFD
   WD 4  212-252    -STIIYESSEPDTPLVRLGWNKQDPR-YM---ATIIMDSAKVVVLD
   WD 5  257-296    -ALPVVELQRHQASVNAIAWAP-HSSCHI---CTAGDDSQ-ALIWD
   WD 6  307-345    -GLDPILAYTAGAEIEQLQWSS-SQP-DW---VAIAFSTK-LQILR

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP-DGK-RL---VSGSEDGT-IKVWD