Input parameters:
Query = AT1G14990.2 (Len=132)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G14990.2, Len=132):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MMILDVCSEVIKIQKLRRAVSYAGFYCFTAALTFFYTNNTTRAGYSRGDQFYASYPAGTELLTDTAKLYKAALGNCYESE 80
WD40-rpts (___________________________WD 1_________________________
Query 81 DWGPVEFCIMAKHFDRQGKSPYVYHSVSFHKSRILMQYMAHLLSQGQLDGSG 132
WD40-rpts __)
1 WD40-repeats found in QUERY=AT1G14990.2 (Len=132):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 24-83 2.98 237.79 0.03819 20.0% 7.34
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 24-83 GFYCFTAALTFFYTNNTTRAGYSRGDQFYASYPAGTELLTDTAKLYKAALGNCYESEDWG
WD40 Template G------------ECLRTLSGHTSGVTSVSFSPDGKRLVSG---------SEDGTIKVWD