Input parameters:

  Query = AT1G15440.1 (Len=900)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15440.1, Len=900):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFRFENLLGAPYRGGNAVITKNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFIN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 LPRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFERVRTFANSDDKVVSLEWSLDSDYLLVGS 160 
WD40-rpts        (________________WD 3________________)          (_________________WD 4________

Query      161 RDLAARLFCVRKLKGVLNKPFLFLGHRDSVVGCFFGVDKMTNKVNRAFTIARDGYIFSWGYTEKDVKMDESEDGHSEPPS 240 
WD40-rpts      ________)(_______________________WD 5______________________)     (______________

Query      241 PVTPDRADEVMVENGGGVGTELKKRKEYDGKGLESDEEGDDDDEEYMHRGKWVLLRKDGCNQASAKVTACDYHQGLDMVV 320 
WD40-rpts      ___WD 6________________)                                (_______________WD 7____

Query      321 VGFSNGVFGLYQMPDFICIHLLSISRQKLTTAVFNERGNWLTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPD 400 
WD40-rpts      ___________)   (_________________WD 8_________________)   (_________________WD 9

Query      401 SQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSL 480 
WD40-rpts      ________________)   (_________________WD10________________)   (_________________

Query      481 TADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPVHGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNH 560 
WD40-rpts      _WD11_________________)   (_________________WD12________________)   (___________

Query      561 DVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGRRDIAGGRVMTDRRSAANSSSGKCFTTLCYSADGGYILAAG 640 
WD40-rpts      ______WD13________________)                       (_________________WD14________

Query      641 TSRYICMYDIADQVLLRRFQISHNLSLDGVLDFLHSKKMTEAGPIDLIDDDNSDEEGGIDKQSRGNLGYDLPGSRPNRGR 720 
WD40-rpts      ________)           (__________________WD15_________________)   (_______________

Query      721 PIIRTKSLSIAPTGRSFAAATTEGVLIFSIDDTFIFDPTDLDIDVTPEAVEAAIEEDEVSRALALSMRLNEDSLIKKCIF 800 
WD40-rpts      _____WD16____________________)                                                  

Query      801 AVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPALRSLQKAITRAHQDLA 880 
WD40-rpts                                                                                      

Query      881 DMCSSNEYTLRYLCSVPNNH 900 
WD40-rpts                          

16 WD40-repeats found in QUERY=AT1G15440.1 (Len=900):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       3.81  272.06  0.01334       10.0%     31.62
  WD 2:  Seg  4    42-80       5.82  355.09  0.00102       15.0%     57.23
  WD 3:  Seg  8    83-120      5.17  328.17  0.00235       20.0%     52.64
  WD 4:  Seg 12   131-169      7.23  413.37  0.00017       27.5%     56.01
  WD 5:  Seg 16   170-220      5.60  346.15  0.00135       25.0%     49.87
  WD 6:  Seg 20   226-264      5.66  348.32  0.00126       10.0%     31.63
  WD 7:  Seg 26   297-332      5.65  348.22  0.00126       15.0%     49.16
  WD 8:  Seg 29   336-375      6.56  385.45  0.00040       30.0%     56.07
  WD 9:  Seg 33   379-417      9.17  493.53  1.4e-05       32.5%     57.04
  WD10:  Seg 37   421-459     10.09  531.42  4.3e-06       42.5%     57.12
  WD11:  Seg 41   463-503      4.98  320.43  0.00299       25.0%     53.71
  WD12:  Seg 45   507-545      9.87  522.46  5.6e-06       40.0%     55.21
  WD13:  Seg 49   549-587      8.44  463.46  3.5e-05       37.5%     57.48
  WD14:  Seg 54   611-649      5.19  328.97  0.00229       17.5%     48.24
  WD15:  Seg 58   661-701      3.89  275.17  0.01212       15.0%     33.79
  WD16:  Seg 61   705-750      4.08  283.23  0.00945       20.0%     50.51

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MEFRF------ENLLGAPY-R-------GGNAVITKNTQ-----LISPV--G-N-RVSVTD
   WD 2   42-80     -NHSV------TLPLETST-N-------ICRLASSPDGT-----FLLAVDEQ-N-RCLFIN
   WD 3   83-120    -RRVV------LHRITFKD-K-------VGALKFSPNGK-----FIAVGI-G-K-LVEIWR
   WD 4  131-169    -FERV------RTFANSDD-K-------VVSLEWSLDSD-----YLLVGSRD-L-AARLFC
   WD 5  170-220    VRKLKGVLNKPFLFLGHRD-S-------VVGCFFGVDKMTNKVNRAFTIARD-G-YIFSWG
   WD 6  226-264    -VKMD------ESEDGHSE-P-------PSPVTPDRADE-----VMVENGGG-V-GTELKK
   WD 7  297-332    KDGC----------NQASA-K-------VTACDYHQGLD-----MVVVGFSN-G-VFGLYQ
   WD 8  336-375    -FICI------HLLSISRQ-K-------LTTAVFNERGN-----WLTFGCAKLG-QLLVWD
   WD 9  379-417    -ETYI------LKQQGHYF-D-------VNCVTYSPDSQ-----LLATGADD-N-KVKVWN
   WD10  421-459    -GTCF------ITFTEHTN-A-------VTALHFMADNH-----SLLSASLD-G-TVRAWD
   WD11  463-503    -YKNY------KTYTTPTPRQ-------FVSLTADPSGD-----VVCAGTLD-SFEIFVWS
   WD12  507-545    -GQIK------DILSGHEA-P-------VHGLMFSPLTQ-----LLASSSWD-Y-TVRLWD
   WD13  549-587    -SKGT------VETFRHNH-D-------VLTVAFRPDGK-----QLASSTLD-G-QINFWD
   WD14  611-649    -DRRS------AANSSSGK-C-------FTTLCYSADGG-----YILAAGTS-R-YICMYD
   WD15  661-701    ISHNL-------SLDGVLD-F-------LHSKKMTEAGP---IDLIDDDNSD-E-EGGIDK
   WD16  705-750    -GNLG------YDLPGSRP-NRGRPIIRTKSLSIAPTGR-----SFAAATTE-G-VLIFSI

   WD40 Template    TGECL------RTLSGHTS-G-------VTSVSFSPDGK-----RLVSGSED-G-TIKVWD