Input parameters:

  Query = AT1G15440.2 (Len=860)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15440.2, Len=860):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFRFENLLGAPYRGGNAVITKNTQLISPVGNRVSVTDLSKNHSVTLPLETSTNICRLASSPDGTFLLAVDEQNRCLFIN 80  
WD40-rpts      (________________WD 1________________)   (_________________WD 2________________)

Query       81 LPRRVVLHRITFKDKVGALKFSPNGKFIAVGIGKLVEIWRSPGFRRAVLPFERVRTFANSDDKVVSLEWSLDSDYLLVGS 160 
WD40-rpts        (________________WD 3________________)          (_________________WD 4________

Query      161 RDLAARAFTIARDGYIFSWGYTEKDVKMDESEDGHSEPPSPVTPDRADEVMVENGGGVGTELKKRKEYDGKGLESDEEGD 240 
WD40-rpts      ________)                                        (________________WD 5__________

Query      241 DDDEEYMHRGKWVLLRKDGCNQASAKVTACDYHQGLDMVVVGFSNGVFGLYQMPDFICIHLLSISRQKLTTAVFNERGNW 320 
WD40-rpts      _____)          (_______________WD 6_______________)   (_________________WD 7___

Query      321 LTFGCAKLGQLLVWDWRTETYILKQQGHYFDVNCVTYSPDSQLLATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFM 400 
WD40-rpts      ______________)   (_________________WD 8________________)   (_________________WD

Query      401 ADNHSLLSASLDGTVRAWDFKRYKNYKTYTTPTPRQFVSLTADPSGDVVCAGTLDSFEIFVWSKKTGQIKDILSGHEAPV 480 
WD40-rpts       9________________)   (__________________WD10_________________)   (_____________

Query      481 HGLMFSPLTQLLASSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVLMYTIEGR 560 
WD40-rpts      ____WD11________________)   (_________________WD12________________)           (_

Query      561 RDIAGGRVMTDRRSAANSSSGKCFTTLCYSADGGYILAAGTSRYICMYDIADQVLLRRFQISHNLSLDGVLDFLHSKKMT 640 
WD40-rpts      ______________________WD13______________________)            (_________________W

Query      641 EAGPIDLIDDDNSDEEGGIDKQSRGNLGYDLPGSRPNRGRPIIRTKSLSIAPTGRSFAAATTEGVLIFSIDDTFIFDPTD 720 
WD40-rpts      D14_________________)         (_________________WD15________________)           

Query      721 LDIDVTPEAVEAAIEEDEVSRALALSMRLNEDSLIKKCIFAVAPADIKAVAISVRQKYLERLMEALVDLLENCPHLEFIL 800 
WD40-rpts                                                                                      

Query      801 HWCQEICKAHGSSIQRNYRTLLPALRSLQKAITRAHQDLADMCSSNEYTLRYLCSVPNNH 860 
WD40-rpts                                                                  

15 WD40-repeats found in QUERY=AT1G15440.2 (Len=860):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.36  294.68  0.00663       10.0%     39.48
  WD 2:  Seg  5    42-80       5.95  360.51  0.00086       15.0%     56.82
  WD 3:  Seg  9    83-120      5.26  332.02  0.00209       20.0%     51.17
  WD 4:  Seg 13   131-169      7.46  422.97  0.00012       27.5%     57.81
  WD 5:  Seg 20   210-246      3.88  274.74  0.01229       17.5%     31.42
  WD 6:  Seg 24   257-292      5.90  358.24  0.00092       12.5%     47.07
  WD 7:  Seg 27   296-335      6.65  389.50  0.00035       30.0%     56.76
  WD 8:  Seg 31   339-377      9.30  498.88  1.2e-05       32.5%     57.67
  WD 9:  Seg 35   381-419     10.20  535.96  3.7e-06       42.5%     56.83
  WD10:  Seg 39   423-463      5.19  329.20  0.00228       25.0%     55.79
  WD11:  Seg 43   467-505      9.95  525.59  5.1e-06       40.0%     56.66
  WD12:  Seg 47   509-547      8.65  472.12  2.7e-05       37.5%     57.53
  WD13:  Seg 52   559-609      5.16  327.96  0.00237       17.5%     46.64
  WD14:  Seg 56   622-661      4.14  285.58  0.00879       12.5%     32.15
  WD15:  Seg 61   671-709      4.73  309.99  0.00413       12.5%     34.69

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MEFRF-----------ENLLGAPY-RGGNAVITKNTQ--LISPVGNR----VSVTD
   WD 2   42-80     -NHSV-----------TLPLETST-NICRLASSPDGT--FLLAVDEQ-N-RCLFIN
   WD 3   83-120    -RRVV-----------LHRITFKD-KVGALKFSPNGK--FIAVGI-G-K-LVEIWR
   WD 4  131-169    -FERV-----------RTFANSDD-KVVSLEWSLDSD--YLLVGSRD-L-AARAFT
   WD 5  210-246    ---VM-----------VENGGGVG-TELKKRKEYDGK--GLESDEEG-D-DDDEEY
   WD 6  257-292    ----K-----------DGCNQASA-KVTACDYHQGLD--MVVVGFSN-G-VFGLYQ
   WD 7  296-335    -FICI-----------HLLSISRQ-KLTTAVFNERGN--WLTFGCAKLG-QLLVWD
   WD 8  339-377    -ETYI-----------LKQQGHYF-DVNCVTYSPDSQ--LLATGADD-N-KVKVWN
   WD 9  381-419    -GTCF-----------ITFTEHTN-AVTALHFMADNH--SLLSASLD-G-TVRAWD
   WD10  423-463    -YKNY-----------KTYTTPTPRQFVSLTADPSGD--VVCAGTLD-SFEIFVWS
   WD11  467-505    -GQIK-----------DILSGHEA-PVHGLMFSPLTQ--LLASSSWD-Y-TVRLWD
   WD12  509-547    -SKGT-----------VETFRHNH-DVLTVAFRPDGK--QLASSTLD-G-QINFWD
   WD13  559-609    GRRDIAGGRVMTDRRSAANSSSGK-CFTTLCYSADGG--YILAAGTS-R-YICMYD
   WD14  622-661    SHNL-------------SLDGVLD-FLHSKKMTEAGPIDLIDDDNSD-E-EGGIDK
   WD15  671-709    LPGSR-----------PNRGRPII-RTKSLSIAPTGR--SFAAATTE-G-VL-IFS

   WD40 Template    TGECL-----------RTLSGHTS-GVTSVSFSPDGK--RLVSGSED-G-TIKVWD