Input parameters:

  Query = AT1G15470.1 (Len=333)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15470.1, Len=333):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGAPLVCHGHSRPVVDVAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCSLDKNAIRAASASADFTA 80  
WD40-rpts      (__________________WD 1__________________)   (_________________WD 2_____________

Query       81 KIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKILRIFDLNRPDAPPKEVGNSPGSIRTVEWLHSDNTILSSCT 160 
WD40-rpts      ___)   (________________WD 3________________)   (__________________WD 4_________

Query      161 DTGDIRLWDIRSDKIVHTLETKSPVTSAEVSQDGRYITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLEPKHGNTFIA 240 
WD40-rpts      ________)   (________________WD 5_______________)   (_________________WD 6______

Query      241 GGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIWVVGSVNHPEESNLSGHVKLVAEEVVRKA 320 
WD40-rpts      __________)   (_________________WD 7________________)                           

Query      321 ESLRISEKAAEAK 333 
WD40-rpts                   

7 WD40-repeats found in QUERY=AT1G15470.1 (Len=333):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-42       8.42  462.42  3.6e-05       35.0%     51.46
  WD 2:  Seg  5    46-84       9.92  524.50  5.3e-06       35.0%     54.11
  WD 3:  Seg  9    88-125      8.04  446.63  5.9e-05       27.5%     54.60
  WD 4:  Seg 12   129-169      6.00  362.63  0.00081       25.0%     46.39
  WD 5:  Seg 16   173-209      6.79  395.07  0.00029       30.0%     52.19
  WD 6:  Seg 20   213-251      6.44  380.48  0.00046       25.0%     52.77
  WD 7:  Seg 24   255-293     10.21  536.24  3.7e-06       40.0%     55.66

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-42     MGAPL-VCHGHSRP-VVDVAY-SPVTPD-GFFLISASKDSNPMLRN
   WD 2   46-84     -GDWIGTFEGHKGA-VWSCSL-DK---N-AIRAASASADFTAKIWN
   WD 3   88-125    -GDELHSF-EHKHI-VRACAF-SE---D-THRLLTGGMEKILRIFD
   WD 4  129-169    -PDAPPKEVGNSPGSIRTVEWLHS---D-NTILSSCTDTGDIRLWD
   WD 5  173-209    -DKIVHTLETK-SP-VTSAEV-SQ---D-GRYITTAD-GSSVKFWD
   WD 6  213-251    -FGLLKSYDMPCN--VESASL-EP---KHGNTFIAGGEDMWVHRFD
   WD 7  255-293    -GEEIGCNKGHHGP-VHCVRY-AP---G-GESYTSGSEDGTVRIWV

   WD40 Template    TGECLRTLSGHTSG-VTSVSF-SP---D-GKRLVSGSEDGTIKVWD