Input parameters:

  Query = AT1G15750.1 (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15750.1, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGV 320 
WD40-rpts                                                                       (______________

Query      321 NMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400 
WD40-rpts      __WD 1_______________)  (_________________WD 2_________________)                

Query      401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVI 480 
WD40-rpts      (____________________WD 3___________________)      (__________________WD 4______

Query      481 TCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSA 560 
WD40-rpts      ___________)   (__________________WD 5_________________)   (___________________W

Query      561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640 
WD40-rpts      D 6__________________)   (_________________WD 7_________________)   (___________

Query      641 LQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQG 720 
WD40-rpts      _______WD 8_________________)(_________________WD 9________________)   (________

Query      721 MNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRN 800 
WD40-rpts      _______WD10_______________)            (________________WD11_______________)    

Query      801 ERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 880 
WD40-rpts                                (_______________WD12_______________)   (______________

Query      881 FLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLP 960 
WD40-rpts      ___WD13_________________)   (_________________WD14________________)        (____

Query      961 LPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFMDATVCVFS 1040
WD40-rpts      ______________WD15_________________)(___________________WD16___________________)

Query     1041 SANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPS 1120
WD40-rpts                (___________________WD17__________________)                           

Query     1121 VGASASDQPQR 1131
WD40-rpts                 

17 WD40-repeats found in QUERY=AT1G15750.1 (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   306-342      4.74  310.58  0.00405       15.0%     12.64
  WD 2:  Seg  4   345-384      4.80  312.75  0.00379       22.5%     54.50
  WD 3:  Seg  9   401-445      6.28  374.16  0.00056       17.5%     50.51
  WD 4:  Seg 12   452-492      7.09  407.61  0.00020       37.5%     51.88
  WD 5:  Seg 16   496-536      7.01  404.40  0.00022       32.5%     53.74
  WD 6:  Seg 20   540-582      5.44  339.52  0.00165       22.5%     55.52
  WD 7:  Seg 24   586-625      7.13  408.99  0.00019       32.5%     57.74
  WD 8:  Seg 28   629-669      5.93  359.50  0.00089       20.0%     51.64
  WD 9:  Seg 32   670-708      4.55  302.41  0.00522       15.0%     44.43
  WD10:  Seg 36   712-747      4.68  308.02  0.00439       12.5%     47.57
  WD11:  Seg 41   760-796      5.94  360.20  0.00087        7.5%     43.49
  WD12:  Seg 45   827-862      4.00  279.96  0.01046       15.0%     44.70
  WD13:  Seg 48   866-905      6.51  383.66  0.00042       22.5%     57.93
  WD14:  Seg 52   909-947      8.64  471.55  2.7e-05       32.5%     57.35
  WD15:  Seg 57   956-996      3.38  254.35  0.02301       15.0%     28.10
  WD16:  Seg 60   997-1040     6.27  373.84  0.00057       20.0%     57.00
  WD17:  Seg 65  1051-1093     4.54  302.14  0.00527       15.0%     33.19

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  306-342    RTRP-----MGISDE-VNLGVNM---L---PMSF-SGQ------AHGHS----PAFKAPD
   WD 2  345-384    -PKT-----VARTLS-QGSSPMS---M---DFHP-IKQTLL--LVGTNV----GDIGLWE
   WD 3  401-445    LSKCSMPLQAALVKE-PVVSVNR---V---IWSP-DGS-LF--GVAYSR----HIVQLYS
   WD 4  452-492    -MRQ-----HLEIDA-HVGGVND---I---SFST-PNK-QLCVITCGDD----KTIKVWD
   WD 5  496-536    -GVK-----RHTFEG-HEAPVYS---V-CPHYKE-NIQ-FI--FSTALD----GKIKAWL
   WD 6  540-582    -MGS-----RVDYDA-PGRWCTT---M---AYSA-DGT-RL--FSCGTSKDGESFIVEWN
   WD 7  586-625    -GAV-----KRTYQGFHKRSLGV---V---QFDT-TKN-RY--LAAGDD----FSIKFWD
   WD 8  629-669    -VQL-----LTAIDG-DGGLQAS-PRI---RFNK-EGS-LL--AVSGNE----NVIKIMA
   WD 9  670-708    NSDG-----LRLLH--TFENISS---E---SSKP-AIN-SI--AAAAAA----AATSAGH
   WD10  712-747    -SAN-----VVSIQG-MNGDSRN---M------V-DVK-PV--ITEESN----DKSKIWK
   WD11  760-796    ---L-----RLPENL-RVAKISR---L---IFTN-SGN-AI--LALASN----AIHLLWK
   WD12  827-862    NDV--------AETN-PEEAVPC---F---ALSK-NDS-YV--MSAS-G----GKISLFN
   WD13  866-905    -FKT-----MATFMP-PPPAATF---L---AFHPQDNN-II--AIGMDD----STIQIYN
   WD14  909-947    -DEV-----KSKLKG-HSKRITG---L---AFSN-VLN-VL--VSSGAD----AQLCVWN
   WD15  956-996    -SKV-----LPLPQG-RPNSAPSDTRV---QFHQ-DQA-HF--LVVH-E----TQLAIYE
   WD16  997-1040   TTKL-ECMKQWAVRE-SLAPITH---A---TFSC-DSQ-LV--YASFMD----ATVCVFS
   WD17 1051-1093   NPSA-----YLPASL-SNSNVHP---LVIAAHPQ-EPN-MF--AVGLSD----GGVHIFE

   WD40 Template    TGEC-----LRTLSG-HTSGVTS---V---SFSP-DGK-RL--VSGSED----GTIKVWD