Input parameters:

  Query = AT1G15750.2 (Len=1131)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15750.2, Len=1131):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240 
WD40-rpts                                                                                      

Query      241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGV 320 
WD40-rpts                                                                        (_____________

Query      321 NMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWD 400 
WD40-rpts      __WD 1_______________)  (_________________WD 2_________________)                

Query      401 LSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVI 480 
WD40-rpts      (____________________WD 3___________________)      (__________________WD 4______

Query      481 TCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSA 560 
WD40-rpts      ___________)   (__________________WD 5_________________)   (___________________W

Query      561 DGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGG 640 
WD40-rpts      D 6__________________)   (_________________WD 7_________________)   (___________

Query      641 LQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQG 720 
WD40-rpts      _______WD 8_________________)(_________________WD 9________________)   (________

Query      721 MNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQRN 800 
WD40-rpts      _______WD10_______________)              (_______________WD11______________)    

Query      801 ERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT 880 
WD40-rpts           (__________________________WD12_________________________)   (______________

Query      881 FLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLP 960 
WD40-rpts      ___WD13_________________)   (_________________WD14________________)          (__

Query      961 LPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFMDATVCVFS 1040
WD40-rpts      _______________WD15________________)(___________________WD16___________________)

Query     1041 SANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPS 1120
WD40-rpts                (___________________WD17__________________)                           

Query     1121 VGASASDQPQR 1131
WD40-rpts                 

17 WD40-repeats found in QUERY=AT1G15750.2 (Len=1131):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   307-342      3.26  249.12  0.02702       15.0%      5.11
  WD 2:  Seg  3   345-384      5.43  339.15  0.00167       22.5%     54.36
  WD 3:  Seg  8   401-445      6.74  393.01  0.00031       17.5%     53.46
  WD 4:  Seg 12   452-492      7.41  420.91  0.00013       37.5%     52.42
  WD 5:  Seg 16   496-536      7.31  416.75  0.00015       32.5%     56.76
  WD 6:  Seg 20   540-582      5.82  354.96  0.00102       22.5%     56.49
  WD 7:  Seg 24   586-625      7.42  421.01  0.00013       32.5%     58.23
  WD 8:  Seg 28   629-669      6.39  378.73  0.00049       17.5%     57.71
  WD 9:  Seg 32   670-708      4.39  296.12  0.00635       15.0%     38.63
  WD10:  Seg 36   712-747      4.64  306.30  0.00463       12.5%     44.47
  WD11:  Seg 41   762-796      5.95  360.48  0.00086        7.5%     42.18
  WD12:  Seg 46   806-862      3.22  247.79  0.02814       15.0%     41.40
  WD13:  Seg 50   866-905      6.79  395.08  0.00029       22.5%     59.33
  WD14:  Seg 54   909-947      8.74  475.63  2.4e-05       32.5%     59.52
  WD15:  Seg 59   958-996      4.28  291.26  0.00738       10.0%     30.57
  WD16:  Seg 62   997-1040     6.65  389.44  0.00035       20.0%     57.76
  WD17:  Seg 67  1051-1093     5.16  327.64  0.00239        7.5%     47.98

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  307-342    -TRP-----MG------------------ISDE-VNL--GVNML--PMSF-SG------QAHG----HSPAFKAPD
   WD 2  345-384    -PKT-----VA------------------RTLS-QGS--SPMSM--DFHP-IKQTLL--LVGT----NVGDIGLWE
   WD 3  401-445    LSKCSMPLQAA------------------LVKE-PVV--SVNRV--IWSP-DGS-LF--GVAY----SRHIVQLYS
   WD 4  452-492    -MRQ-----HL------------------EIDA-HVG--GVNDI--SFST-PNK-QLCVITCG----DDKTIKVWD
   WD 5  496-536    -GVK-----RH------------------TFEG-HEA--PVYSVCPHYKE-NIQ-FI--FSTA----LDGKIKAWL
   WD 6  540-582    -MGS-----RV------------------DYDA-PGR--WCTTM--AYSA-DGT-RL--FSCGTSKDGESFIVEWN
   WD 7  586-625    -GAV-----KR------------------TYQGFHKR--SLGVV--QFDT-TKN-RY--LAAG----DDFSIKFWD
   WD 8  629-669    -VQL-----LT------------------AIDG-DGGLQASPRI--RFNK-EGS-LL--AVSG----NENVIKIMA
   WD 9  670-708    NSDG-----LR------------------LLHT-FEN---ISSE--SSKP-AIN-SI--AAAA----AAAATSAGH
   WD10  712-747    -SAN-----VV------------------SIQG-MNG--DSRNM-----V-DVK-PV--ITEE----SNDKSKIWK
   WD11  762-796    ----------L------------------PENL-RVA--KISRL--IFTN-SGN-AI--LALA----SNAIHLLWK
   WD12  806-862    GKAT-----ASLPPQQWQPASGILMTNDVAETN-PEE--AVPCF--ALSK-NDS-YV--MSAS-----GGKISLFN
   WD13  866-905    -FKT-----MA------------------TFMP-PPP--AATFL--AFHPQDNN-II--AIGM----DDSTIQIYN
   WD14  909-947    -DEV-----KS------------------KLKG-HSK--RITGL--AFSN-VLN-VL--VSSG----ADAQLCVWN
   WD15  958-996    VLPL-----PQ------------------GRPN-SAP--SDTRV--QFHQ-DQA-HF--LVVH-----ETQLAIYE
   WD16  997-1040   TTKL-ECMKQW------------------AVRE-SLA--PITHA--TFSC-DSQ-LV--YASF----MDATVCVFS
   WD17 1051-1093   NPSA--YLPAS------------------LSNS-NVH--PLVIA--AHPQ-EPN-MF--AVGL----SDGGVHIFE

   WD40 Template    TGEC-----LR------------------TLSG-HTS--GVTSV--SFSP-DGK-RL--VSGS----EDGTIKVWD