Input parameters:

  Query = AT1G15850.1 (Len=140)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G15850.1, Len=140):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTSGDKATSSTNNPNNSYEITPPATDSISSLSFSPKADILVATSWDCQVRCWEITRSDGSIASEPKVSMSHDQPVLCSA 80  
WD40-rpts                     (_________________WD 1________________)        (_________________

Query       81 WKDDGTTVFTGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWIPGMNLLVTGSWDKTLK 140 
WD40-rpts      WD 2________________)   (_______________WD 3_______________)

3 WD40-repeats found in QUERY=AT1G15850.1 (Len=140):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    16-54       9.33  500.25  1.1e-05       27.5%     53.89
  WD 2:  Seg  6    63-101      8.61  470.35  2.8e-05       20.0%     44.67
  WD 3:  Seg  8   105-140      6.27  373.64  0.00057       27.5%     39.17

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   16-54     NNSYEITPPATDSISSLSFSPKADILVATSWDCQVRCWE
   WD 2   63-101    ASEPKVSMSHDQPVLCSAWKDDGTTVFTGGCDKQAKMWP
   WD 3  105-140    GAQPSTVAMHDAPFNQIAWIPGMNLLVTGSWDKTLK---

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD