Input parameters:
Query = AT1G17030.1 (Len=502)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G17030.1, Len=502):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEKSINGSCRLIKRLVIILSCLSYSFVRSDFTERTNINYVSAVGDPGMRNDNLRVAIEAWNQCNEVGEEATNMGSPRMAD 80
WD40-rpts (_______________________WD 1_______________________)
Query 81 CFDIDNSSFPVKIIHKVDERDNRLGVGNGTYGGISAGDNADIYAAQKEVYLGNKCQVVDKPNPWQFWMIMLKNGNTDTLA 160
WD40-rpts
Query 161 AICPENGKKAKPFPPTGRFPCFGKGCMNMPSMHHEYTSLVDNEEGHMSGSFYGTWDLDNDQKDPVGNNSYYKVKWEKKIG 240
WD40-rpts
Query 241 GNESWVFHHLLKTSSKYPWLMLYLRADASRGFSGGYHYDTRGMMKMTLKSPDFKVKFKLEIIKGGGSGSQFYLMDMGSCW 320
WD40-rpts
Query 321 KNDGRDCDGDVTTDVTRYSEMIINPGATAVCTRNRLGACPPEHTFPNGTKVHRTDKEKFPFEAYHYYCVPGNARFAESPY 400
WD40-rpts
Query 401 EVCDPYSNPQPQEILQILPHPVWEQFGYPTKKGQGWIGDPRTWELDVGKLSQSLFFYQDPGTKPVERHWSSIDLGTEIYM 480
WD40-rpts
Query 481 SKNQIAEWTVTDFDIVIPNADI 502
WD40-rpts
1 WD40-repeats found in QUERY=AT1G17030.1 (Len=502):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 29-80 2.97 237.21 0.03887 20.0% -12.94
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 29-80 SDFTERTNINYVSAVGDPGMRNDNLRVAIEAWNQCNEVGEEATNMGSPRMAD
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLV------------SGSEDGTIKVWD