Input parameters:
Query = AT1G17500.1 (Len=1216)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G17500.1, Len=1216):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MARGRIRSKLRLSHIYTFGCLRPSADEGQDPHPIQGPGFSRTVYCNQPHMHKKKPLKYRSNYVSTTRYNLITFFPKCLYE 80
WD40-rpts
Query 81 QFHRAANFYFLVAAILSVFPLSPFNKWSMIAPLVFVVGLSMLKEALEDWSRFMQDVKINASKVYVHKSDGEFRRRKWKKI 160
WD40-rpts
Query 161 SVGDIVKVEKDGFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRSLEVTLSLDDYDSFKDFTGIIRCEDPNPSLYTF 240
WD40-rpts
Query 241 VGNLEYERQIFPLDPSQILLRDSKLRNTPYVYGVVVFTGHDTKVMQNSTKSPSKRSRIEKTMDYIIYTLLVLLILISCIS 320
WD40-rpts
Query 321 SSGFAWETKFHMPKWWYLRPEEPENLTNPSNPVYAGFVHLITALLLYGYLIPISLYVSIEVVKVLQASFINKDLHMYDSE 400
WD40-rpts
Query 401 SGVPAHARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVEVAAAQQMAVDLDEHGEVSSRTSTPR 480
WD40-rpts
Query 481 AQARDIEVESSITPRIPIKGFGFEDIRLMDGNWLREPHTDDILLFFRILAICHTAIPELNEETGKYTYEAESPDEASFLT 560
WD40-rpts
Query 561 AASEFGFVFFKRTQSSVYVHERLSHSGQTIEREYKVLNLLDFTSKRKRMSVVVRDEEGQILLLCKGADSIIFERLAKNGK 640
WD40-rpts (_________________________
Query 641 VYLGPTTKHLNEYGEAGLRTLALSYRKLDEEEYSAWNAEFHKAKTSIGSDRDELLERISDMIEKDLILVGATAVEDKLQK 720
WD40-rpts __________________________________WD 1__________________________________________
Query 721 GVPQCIDKLAQAGLKLWVLTGDKMETAINIGYSCSLLRQGMKQICITVVNSEGASQDAKAVKDNILNQITKAVQMVKLEK 800
WD40-rpts _________________)
Query 801 DPHAAFALIIDGKTLTYALEDEMKYQFLALAVDCASVICCRVSPKQKALVTRLVKEGTGKITLAIGDGANDVGMIQEADI 880
WD40-rpts
Query 881 GVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTGFSGQSVYNDYYLL 960
WD40-rpts
Query 961 LFNVVLTSLPVIALGVFEQDVSSEICLQFPALYQQGKKNLFFDWYRILGWMGNGVYSSLVIFFLNIGIIYEQAFRVSGQT 1040
WD40-rpts
Query 1041 ADMDAVGTTMFTCIIWAVNVQIALTVSHFTWIQHVLIWGSIGLWYLFVALYGMMPPSLSGNIYRILVEILAPAPIYWIAT 1120
WD40-rpts
Query 1121 FLVTVTTVLPYFAHISFQRFLHPLDHHIIQEIKYYKRDVEDRRMWTRERTKAREKTKIGFTARVDAKIRHLRSKLNKKQS 1200
WD40-rpts
Query 1201 NMSQFSTQDTMSPRSV 1216
WD40-rpts
1 WD40-repeats found in QUERY=AT1G17500.1 (Len=1216):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 22 615-738 2.79 230.04 0.04832 20.0% 30.61
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 615-738 DEEGQILLLCKGADSIIFERLAKNGKVYLGPTTKHLNEYGEAGLRTLALSYRKLDEEEYSAWNAEFHKAKTSIGSDRDELLERISDMIEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKLWV
WD40 Template TGECLRTLSGHTSG------------VT------------------------SVS-----------------FSPD-------------GKRLVSGS-------EDG-----------TIKVWD