Input parameters:

  Query = AT1G17720.1 (Len=501)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G17720.1, Len=501):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQ 80  
WD40-rpts                              (_________________WD 1_________________)                

Query       81 TDYPVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSE 160 
WD40-rpts                        (___________________WD 2___________________)          (_______

Query      161 SSNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISA 240 
WD40-rpts      __________________WD 3_________________________)   (________________WD 4________

Query      241 DDLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAP 320 
WD40-rpts      ________)           (_________________WD 5_________________)                   (

Query      321 GSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGL 400 
WD40-rpts      ________________WD 6________________)            (____________________WD 7______

Query      401 RVATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRRGSESPGTEANGNAYDFTTKLLHMA 480 
WD40-rpts      ______________)(___________________WD 8__________________)                      

Query      481 WHPTENSIACAAANSLYMYYA 501 
WD40-rpts                           

8 WD40-repeats found in QUERY=AT1G17720.1 (Len=501):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-64       8.96  484.64  1.8e-05       12.5%     40.03
  WD 2:  Seg  6    99-142      5.16  327.72  0.00238       17.5%     44.64
  WD 3:  Seg 10   153-208      5.21  329.95  0.00222       20.0%     28.01
  WD 4:  Seg 12   212-249      6.16  369.28  0.00066       22.5%     49.69
  WD 5:  Seg 17   261-300      6.69  391.19  0.00033       25.0%     40.27
  WD 6:  Seg 20   320-357      5.75  352.34  0.00111       22.5%     39.06
  WD 7:  Seg 24   370-415      6.29  374.31  0.00056       25.0%     42.21
  WD 8:  Seg 27   416-458      6.47  381.81  0.00044       12.5%     32.67

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-64     GER---T----------------AGE------EVQ--EVDIISAIEFDK--SGDHLATGDRGGRVVLFE
   WD 2   99-142    HEP---E----------------FDY------LKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWK
   WD 3  153-208    EMN---IDPSESSNIPPQLVTNGLPA------DKG--HDYLSKDFSFPP--GGIPSLRLPVVVTSQETN
   WD 4  212-249    -RC---R----------------RVY------AHA--HDYHINSISNSS--DGETFISAD-DLRVNLWN
   WD 5  261-300    -DV---K----------------PTN------MED--LTEVITSAEFHP-IHCNMLAYSSSKGSIRLID
   WD 6  320-357    -PG---S----------------RSF------FTE--IIASISDIKFSK--DGRYILSRD-YMTLKLWD
   WD 7  370-415    VHE---H----------------LRPRLCDLYEND--SIFDKFECCLSG--DGLRVATGSYSNLFRVFG
   WD 8  416-458    ASQGSTE----------------AAT------LEA--SKNPMRRQIQTP--ARPSRSIGSMTRVVRRGS

   WD40 Template    TGE---C----------------LRT------LSG--HTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD