Input parameters:

  Query = AT1G17720.2 (Len=500)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G17720.2, Len=500):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNGGDDAATSGPPPSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGGSRKDLEQ 80  
WD40-rpts                              (_________________WD 1_________________)                

Query       81 TDYPVRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLSTNDKTIKYWKVQEKKIKKISEMNIDPSE 160 
WD40-rpts                    (_____________________WD 2_____________________)   (______________

Query      161 SSNIPPQLVTNGLPADKGHDYLSKDFSFPPGGIPSLRLPVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISAD 240 
WD40-rpts      ___WD 3________________)              (______________________WD 4_______________

Query      241 DLRVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQSALCDSHTKLFEEPEAPG 320 
WD40-rpts      _______)            (_________________WD 5________________)                   (_

Query      321 SRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSGPVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLR 400 
WD40-rpts      _______________WD 6________________)            (____________________WD 7_______

Query      401 VATGSYSNLFRVFGASQGSTEAATLEASKNPMRRQIQTPARPSRSIGSMTRVVRRGSESPGTEANGNAYDFTTKLLHMAW 480 
WD40-rpts      _____________)(___________________WD 8__________________)    (_________________W

Query      481 HPTENSIACAAANSLYMYYA 500 
WD40-rpts      D 9________________)

9 WD40-repeats found in QUERY=AT1G17720.2 (Len=500):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    25-64       8.88  481.36  2.0e-05       12.5%     39.02
  WD 2:  Seg  6    95-142      4.79  312.35  0.00384       15.0%     47.83
  WD 3:  Seg  9   146-184      5.13  326.57  0.00247        7.5%     11.00
  WD 4:  Seg 12   199-248      5.55  344.11  0.00143       22.5%     43.45
  WD 5:  Seg 17   261-299      6.57  386.02  0.00039       25.0%     43.78
  WD 6:  Seg 20   319-356      5.51  342.20  0.00152       22.5%     43.87
  WD 7:  Seg 24   369-414      6.03  363.79  0.00078       25.0%     43.80
  WD 8:  Seg 27   415-457      6.45  380.92  0.00046       12.5%     39.24
  WD 9:  Seg 30   462-500      3.97  278.47  0.01095        7.5%     38.06

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   25-64     GER---T------AGE------EV-----------QEVDIISAIEF--DK-SGDHLATGDRGGRVVLFE
   WD 2   95-142    EFQ---SHEPEFDYLK------SL-----------EIEEKINKIRWCQPA-NGALFLLSTNDKTIKYWK
   WD 3  146-184    -KK---I------KKI------SE-----------MNIDPSESSNI--PP-QLVTNGLPADKGHDYLSK
   WD 4  199-248    PVV---T------SQE------TNLVARCRRVYAHAHDYHINSISN--SS-DGETFISAD-DLRVNLWN
   WD 5  261-299    --V---K------PTN------ME-----------DLTEVITSAEF--HPIHCNMLAYSSSKGSIRLID
   WD 6  319-356    -PG---S------RSF------FT-----------EIIASISDIKF--SK-DGRYILSRD-YMTLKLWD
   WD 7  369-414    VHE---H------LRPRLCDLYEN-----------DSIFDKFECCL--SG-DGLRVATGSYSNLFRVFG
   WD 8  415-457    ASQGSTE------AAT------LE-----------ASKNPMRRQIQ--TP-ARPSRSIGSMTRVVRRGS
   WD 9  462-500    -TE---A------NGN------AY-----------DFTTKLLHMAW--HP-TENSIACAAANSLYMYYA

   WD40 Template    TGE---C------LRT------LS-----------GHTSGVTSVSF--SP-DGKRLVSGSEDGTIKVWD