Input parameters:

  Query = AT1G17745.2 (Len=651)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G17745.2, Len=651):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHRRYATSVKLTAISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTL 80  
WD40-rpts                                                                                      

Query       81 PKPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVD 160 
WD40-rpts                                                                   (__________________

Query      161 LQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGTLNYLFLVLLLRWNCRQSKHQYTIETETEKRSK 240 
WD40-rpts      ____________________________WD 1______________________________________________) 

Query      241 YVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKKVF 320 
WD40-rpts                                                                                      

Query      321 NDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVA 400 
WD40-rpts                                                                                      

Query      401 IEIAEAVAGALKGELSATAVNAPMVAPEVLSELTPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRA 480 
WD40-rpts                                                                                      

Query      481 MITKGIIEPISDSYVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIEGKVKYGV 560 
WD40-rpts                                                                                      

Query      561 PHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRTVLRKQAIMAIGVDEEPDNKTLERIGGV 640 
WD40-rpts                                                                                      

Query      641 SAIEEFVFLKL 651 
WD40-rpts                 

1 WD40-repeats found in QUERY=AT1G17745.2 (Len=651):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   142-239      2.96  236.75  0.03942       15.0%      7.74

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  142-239    AKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGTLNYLFLVLLLRWNCRQSKHQYTIETETEKRS

   WD40 Template    TGECLRTLSGHTSGVTSVS-----------FSPDGK-----------------RLV--------SGSED--------------GTIKVW--------D