Input parameters:

  Query = AT1G18080.1 (Len=327)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G18080.1, Len=327):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALS 80  
WD40-rpts         (__________________WD 1_________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 160 
WD40-rpts      __________)   (_________________WD 3________________)  (____________________WD 4

Query      161 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 240 
WD40-rpts      ___________________)   (_________________WD 5________________)   (______________

Query      241 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 320 
WD40-rpts      __WD 6_______________)   (__________________________WD 7________________________

Query      321 VWGIGRY 327 
WD40-rpts      __)    

7 WD40-repeats found in QUERY=AT1G18080.1 (Len=327):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-44       7.99  444.82  6.3e-05       30.0%     51.12
  WD 2:  Seg  5    53-91      10.07  530.53  4.4e-06       42.5%     53.98
  WD 3:  Seg  9    95-133     10.66  554.83  2.1e-06       47.5%     56.22
  WD 4:  Seg 13   136-180      8.24  455.08  4.6e-05       50.0%     57.85
  WD 5:  Seg 17   184-222     10.49  547.93  2.6e-06       42.5%     53.77
  WD 6:  Seg 21   226-262      6.58  386.62  0.00038       30.0%     54.13
  WD 7:  Seg 25   266-323      8.39  461.31  3.8e-05       35.0%     54.65

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-44     GLVLKGTMR----AHT-------------------DMVTAIATPIDNA--DIIVSASRDKSIILWK
   WD 2   53-91     -GVAQRRLT----GHS-------------------HFVEDVVLSSD-G--QFALSGSWDGELRLWD
   WD 3   95-133    -GVSTRRFV----GHT-------------------KDVLSVAFSLD-N--RQIVSASRDRTIKLWN
   WD 4  136-180    -GECKYTISEGGEGHR-------------------DWVSCVRFSPN-TLQPTIVSASWDKTVKVWN
   WD 5  184-222    -CKLRSTLA----GHT-------------------GYVSTVAVSPD-G--SLCASGGKDGVVLLWD
   WD 6  226-262    -GKKLYSLE----AN--------------------SVIHALCFSPN-R--YWLCAAT-EHGIKIWD
   WD 7  266-323    -KSIVEDLK----VDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD-G--STLFSGYTDGVIRVWG

   WD40 Template    TGECLRTLS----GHT-------------------SGVTSVSFSPD-G--KRLVSGSEDGTIKVWD