Input parameters:
Query = AT1G18530.1 (Len=157)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G18530.1, Len=157):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MEDQIRQLKDIFDRFDMDADGSLTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEFDELVGTILPDLNEEVLINS 80
WD40-rpts (___________________________________________________________
Query 81 EQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIMAKSAVDYFGLKINS 157
WD40-rpts ___WD 1_____________________________________________________________)
1 WD40-repeats found in QUERY=AT1G18530.1 (Len=157):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 21-149 2.83 231.70 0.04596 27.5% -4.62
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 21-149 GSLTILELAALLRSLGLKPSGDQIHVLLASMDSNGNGFVEFDELVGTILPDLNEEVLINSEQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIMAKSAVD
WD40 Template GECL------------RTLS-------------GHTSGVT--------------SVSFS------------PDGKRLVS---------------G-------------SEDGTIK-----------VWD