Input parameters:

  Query = AT1G18830.1 (Len=969)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G18830.1, Len=969):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDCIKSIGRSAFVAIAPESPFIAAGTMAGAVDLSFSSSANLEIFELDFQSNDRELKLVGQCQSSERFNRLAWGSYGSGSD 80  
WD40-rpts      (_______________WD 1______________)                          (_______________WD 

Query       81 GLIAGGLVDGNIGLWNPISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDLANPSKPSHYLKGTGS 160 
WD40-rpts      2______________)(_____________________WD 3_____________________)(_______________

Query      161 YMQSEISSLSWNKGFQHVLASTSHNGTTVIWDVNNEKIITDLKTTVRCSVLQWDPDHFNQILVASDEDSSPNVKLLDIRY 240 
WD40-rpts      ______WD 4_____________________)   (__________________WD 5__________________)   

Query      241 LQSPVRTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICWNTKTGKIVAELPTGQNWNFDVHWYPKMPGVISASSVDGKI 320 
WD40-rpts           (_______________WD 6_______________)   (_________________WD 7______________

Query      321 GIYNLEGCSSYGTENQQHFLFHLLDADPLTAPKWWKRPAGASFGFGGKLISFNKNLPEASEVFLHSLATEKSLVNRISKF 400 
WD40-rpts      ___)                                                                            

Query      401 EAALENGEKTSLRGLCEKKTEEAESEEEKETWGLLKIMLEEDGNAKTKLRSHLGFSLPSEENDQTANEPHATCSSTNVEE 480 
WD40-rpts                                                                                      

Query      481 TQKVPEPEGEEEESSDPTFDDAIQRSLIVGDYKEAVAQCFSANKMADALVIAHVGGTELWESTRDKYIRMSNAPYMKVVS 560 
WD40-rpts                                                                                      

Query      561 AMMNNDLMTYLHTRQPKSWKETLALICTFAEGDEWISLCDALASNLMAAGFTLAATLCYICAGNVDKTVDIWSMSLEKQS 640 
WD40-rpts                                                                                      

Query      641 AGKSYAECVQDLMEKTLVLALTTCNKRVSASLRKLFESYAEILASQGLIATAMKFLKLLESGDFSPELSILRDRISLYAE 720 
WD40-rpts                                                                                      

Query      721 PEAANTSASTNTQPKISNPYQEKSFTPAPLSNAQPSRSITFFPLNPPRELKNADQYQQPTMDYHSFNRSAGPAYNAPPGP 800 
WD40-rpts                                                                                      

Query      801 GSYRSIHSQVGPYINSKIPQTVAPPVRPMTPTHQVAVQPEPVAPPPTVQTADTSNVPAHQKPIVASLTRLFKETFEPLRG 880 
WD40-rpts                                                                                      

Query      881 YSRDTPAKKREAEDNCSRKLGALFSKLNNGDISKNAAEKLTQLCQALDKRDFGAALKIQGLMTSTEWDECSSWLPTLKKM 960 
WD40-rpts                                                                                      

Query      961 IVTGRQNVR 969 
WD40-rpts               

7 WD40-repeats found in QUERY=AT1G18830.1 (Len=969):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-35       3.19  246.30  0.02945       10.0%     40.79
  WD 2:  Seg  6    62-96       4.59  304.16  0.00495       15.0%     27.39
  WD 3:  Seg  9    97-144      6.80  395.37  0.00029       35.0%     47.05
  WD 4:  Seg 12   145-192      5.29  333.03  0.00202       30.0%     43.98
  WD 5:  Seg 15   196-237      3.09  242.48  0.03310       22.5%     49.65
  WD 6:  Seg 19   246-281      6.45  381.16  0.00045       27.5%     48.41
  WD 7:  Seg 22   285-324      5.64  347.57  0.00129       20.0%     52.53

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-35     MDC-------IKSI-----GRSAFVAIAP-E--S-P-F-IAAGTMAGA--VDLSF
   WD 2   62-96     ------------QSSERFNRLAWGSYGSG-S--D-G-L-IAGGLVDGN--IGLWN
   WD 3   97-144    PISSESGEIAHVRDLSKHKGPVRGLEFNV-K--SPN-Q-LASGADDGT--VCIWD
   WD 4  145-192    LANPSKPSHYLKGTGSYMQSEISSLSWNK-G--F-Q-HVLASTSHNGT--TVIWD
   WD 5  196-237    -EK-------IITDLKTTVR-CSVLQWDP-DHFN-Q-I-LVASDEDSSPNVKLLD
   WD 6  246-281    ------------RTFVGHQRGVIAMEWCPSD--S-L-Y-LLTCGKDNR--TICWN
   WD 7  285-324    -GK-------IVAELPTGQNWNFDVHWYP-K--M-PGV-ISASSVDGK--IGIYN

   WD40 Template    TGE-------CLRTLSGHTSGVTSVSFSP-D--G-K-R-LVSGSEDGT--IKVWD