Input parameters:
Query = AT1G19370.1 (Len=605)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G19370.1, Len=605):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MADPLNGKSFFICFSLLFSFTLLFISPLYATESPVIEDVSTDVAVSVSETNREAVLLHNLEELVKNLTELVANLDAKLSA 80
WD40-rpts
Query 81 TPLKEKNEISVDDDIGEEKERGRAKAFSVTKYSPFWSERFQFTSAVKLNSDATCINVLPFRDFEGSSKYFAIGDSKGRVY 160
WD40-rpts
Query 161 VFLRNGDVLIEFFTTVDSPVTAMVSYSSVFKNSSFVVTGHQNGAVLLHRIHEGSNGEDWNSNSVSMEHVGKFDVDDSADP 240
WD40-rpts (____________________WD 1___________________)
Query 241 VTLLEVHHVGRVRYILATDLSGKLTVLTENRTVYGSVIPSSRPLVFLKQRLLFLTESGAGSLDLRSMKIRETECEGLNHS 320
WD40-rpts
Query 321 LARTYVFDAAERSKAYGFTSEGEIIHVLLHGDIMNFKCRVRSKKKFQMEEPVALQSIKGYLLVINEEKVFAFNVSTQHYV 400
WD40-rpts
Query 401 RTAGPRLLFSAGLEEIRSAFLSHRESSSRTTTVVKTRPLIASDRENLLVIGLENGYFAVYKSKLPTLKGDFNTMLWSSPV 480
WD40-rpts (___________________________WD 2___________________________)
Query 481 FFFILFLFGAWHFFAKKKESLTAWGPDDPFTPTGAQNSSAKEPTFTEPSRRNDDLMDLRRRYAGGSYRSVGANDPSSRAP 560
WD40-rpts
Query 561 VDGNYRTTAQDHNNYRGGGSGLDSNGFGNRRDHLFGNNKVLDNES 605
WD40-rpts
2 WD40-repeats found in QUERY=AT1G19370.1 (Len=605):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 8 165-209 3.31 251.40 0.02519 17.5% 38.13
WD 2: Seg 22 402-461 2.81 230.75 0.04729 22.5% 37.04
Multiple sequence alignment of 2 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 165-209 NGDVLIEFFTT--------------------VDSPVTAMVSYSSVF--KNSSFVVTGHQNGAVLLHR
WD 2 402-461 TAGPRLLFSAGLEEIRSAFLSHRESSSRTTTVVKT-------RPLIASDRENLLVIGLENGYFAVYK
WD40 Template TGECLRTLSGH--------------------TSGV-------TSVSFSPDGKRLVSGSEDGTIKVWD