Input parameters:

  Query = AT1G19485.1 (Len=815)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G19485.1, Len=815):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGEECNISLFDYSAESHLKAVESITDLCGEANADIDENDINILSSSVTFLREWRHYNFEPKSFAFYNEAEKNHQPKDIN 80  
WD40-rpts                                                                                      

Query       81 SQTLPQFSSARAPKVKIHDDESSSSGEISKDFVMHVGGSVWAMEWCPRVHGNPDAQAKCEFLAVATHPPDSYSHKIGIPL 160 
WD40-rpts                                                                                      

Query      161 IGRGIIQIWCIINATCKKDSGQVSDKGKKLTGKSRKQPSGETTETTEPKKPRGRPRKHPVETTEPKKPRGRPRKKSTAEL 240 
WD40-rpts                                                                                      

Query      241 PVELDDDVLYVEALSVRYPENSVVPATPLRILRETPVTETKVNNEGSGQVLSSDNANIKLPVRRKRQKTKSTEESCTPMI 320 
WD40-rpts                                                                                      

Query      321 LEYSEAVGNVPSKPSSGISEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYLAVLLGNGSLEVWDVPMPKA 400 
WD40-rpts                                        (_________________WD 1_________________)      

Query      401 TSALYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSIPLTVEWSTLGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLF 480 
WD40-rpts                         (____________________WD 2____________________)(______________

Query      481 FSADTAPIRAVAWAPGESDQESANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPSCVLLSFDDGTLRIL 560 
WD40-rpts      __________WD 3_______________________)    (_________________WD 4________________

Query      561 SLVKVAYDVPATGRPYPNTKQQGLSVYNCSTFPIWSIQVSRLTGIAAYCTADGSIFHFELTTKAVEKDTRNRTPHYLCGQ 640 
WD40-rpts      )                       (_______________WD 5______________)                     

Query      641 LTMKDSTFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLNESPSRYASNVSDVQPLAFAHVEDPGLESESEGTNNKAAKS 720 
WD40-rpts                                                                                      

Query      721 KAKKGKNNARAEEDENSRALVCVKEDGGEEEGRRKAASNNSNGMKAEGFPPKMVAMHRVRWNMNKGSERWLCYGGAAGIV 800 
WD40-rpts                                                                                      

Query      801 RCQEIAPTSDWKPRR 815 
WD40-rpts                     

5 WD40-repeats found in QUERY=AT1G19485.1 (Len=815):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   355-394      4.89  316.45  0.00338       17.5%     26.68
  WD 2:  Seg 15   420-465      5.44  339.51  0.00165       22.5%     41.69
  WD 3:  Seg 18   466-518      4.37  295.16  0.00654       22.5%     47.70
  WD 4:  Seg 21   523-561      6.66  389.60  0.00035       17.5%     48.24
  WD 5:  Seg 25   585-619      5.38  336.78  0.00180       15.0%     34.69

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  355-394    NG--------KVVW----DMKWRPSYAGDSLNKH--SMG-----YLAVLLGNGSLEVWD
   WD 2  420-465    LA--------PVFKCSNLKCGDTKSIPLTVEWSTLGNPD-----FLLAGCHDGTVALWK
   WD 3  466-518    FSTTKSSEDTRPLL----FFSADTAPIRAVAWAP--GESDQESANIVATAGHAGLKFWD
   WD 4  523-561    -F--------RPLW----DLHPVPRFIYSLDWLQ--DPS-----CVLLSFDDGTLRILS
   WD 5  585-619    -------------S----VYNCSTFPIWSIQVSR--LTG-----IAAYCTADGSIFHFE

   WD40 Template    TG--------ECLR----TLSGHTSGVTSVSFSP--DGK-----RLVSGSEDGTIKVWD