Input parameters:
Query = AT1G19485.2 (Len=815)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G19485.2, Len=815):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDGEECNISLFDYSAESHLKAVESITDLCGEANADIDENDINILSSSVTFLREWRHYNFEPKSFAFYNEAEKNHQPKDIN 80
WD40-rpts
Query 81 SQTLPQFSSARAPKVKIHDDESSSSGEISKDFVMHVGGSVWAMEWCPRVHGNPDAQAKCEFLAVATHPPDSYSHKIGIPL 160
WD40-rpts
Query 161 IGRGIIQIWCIINATCKKDSGQVSDKGKKLTGKSRKQPSGETTETTEPKKPRGRPRKHPVETTEPKKPRGRPRKKSTAEL 240
WD40-rpts
Query 241 PVELDDDVLYVEALSVRYPENSVVPATPLRILRETPVTETKVNNEGSGQVLSSDNANIKLPVRRKRQKTKSTEESCTPMI 320
WD40-rpts
Query 321 LEYSEAVGNVPSKPSSGISEDIVALPRVVLCLAHNGKVVWDMKWRPSYAGDSLNKHSMGYLAVLLGNGSLEVWDVPMPKA 400
WD40-rpts (_________________WD 1_________________)
Query 401 TSALYLSSKKAATDPRFVKLAPVFKCSNLKCGDTKSIPLTVEWSTLGNPDFLLAGCHDGTVALWKFSTTKSSEDTRPLLF 480
WD40-rpts (____________________WD 2____________________)(______________
Query 481 FSADTAPIRAVAWAPGESDQESANIVATAGHAGLKFWDLRDPFRPLWDLHPVPRFIYSLDWLQDPSCVLLSFDDGTLRIL 560
WD40-rpts __________WD 3_______________________) (_________________WD 4________________
Query 561 SLVKVAYDVPATGRPYPNTKQQGLSVYNCSTFPIWSIQVSRLTGIAAYCTADGSIFHFELTTKAVEKDTRNRTPHYLCGQ 640
WD40-rpts ) (_______________WD 5______________)
Query 641 LTMKDSTFIVHSPVPDIPIVLKKPVGETGEKQRCLRSLLNESPSRYASNVSDVQPLAFAHVEDPGLESESEGTNNKAAKS 720
WD40-rpts
Query 721 KAKKGKNNARAEEDENSRALVCVKEDGGEEEGRRKAASNNSNGMKAEGFPPKMVAMHRVRWNMNKGSERWLCYGGAAGIV 800
WD40-rpts
Query 801 RCQEIAPTSDWKPRR 815
WD40-rpts
5 WD40-repeats found in QUERY=AT1G19485.2 (Len=815):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 11 355-394 4.89 316.45 0.00338 17.5% 26.68
WD 2: Seg 15 420-465 5.44 339.51 0.00165 22.5% 41.69
WD 3: Seg 18 466-518 4.37 295.16 0.00654 22.5% 47.70
WD 4: Seg 21 523-561 6.66 389.60 0.00035 17.5% 48.24
WD 5: Seg 25 585-619 5.38 336.78 0.00180 15.0% 34.69
Multiple sequence alignment of 5 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 355-394 NG--------KVVW----DMKWRPSYAGDSLNKH--SMG-----YLAVLLGNGSLEVWD
WD 2 420-465 LA--------PVFKCSNLKCGDTKSIPLTVEWSTLGNPD-----FLLAGCHDGTVALWK
WD 3 466-518 FSTTKSSEDTRPLL----FFSADTAPIRAVAWAP--GESDQESANIVATAGHAGLKFWD
WD 4 523-561 -F--------RPLW----DLHPVPRFIYSLDWLQ--DPS-----CVLLSFDDGTLRILS
WD 5 585-619 -------------S----VYNCSTFPIWSIQVSR--LTG-----IAAYCTADGSIFHFE
WD40 Template TG--------ECLR----TLSGHTSGVTSVSFSP--DGK-----RLVSGSEDGTIKVWD