Input parameters:

  Query = AT1G19750.1 (Len=450)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G19750.1, Len=450):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MWKAFKDRETGRFRSNSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTEGRYLLSGAADGSAAVFDVKRATDYE 80  
WD40-rpts                                      (_________________WD 1_________________)        

Query       81 ASGLIAKHKCIFTVRKQHENGHKYAISSAIWYPIDTGMFITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSH 160 
WD40-rpts                    (________________WD 2________________)(___________________WD 3____

Query      161 TLIAAGTDDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLGVRP 240 
WD40-rpts      _______________)   (_________________WD 4_________________)   (________________W

Query      241 PILKRPAVSSKFFSAAKSSLGDQNWLKTLQSKHTGSQSVKGSSSEKPSVEKSRQKRIHPGMLSTLDRATAHYGVVTGLKA 320 
WD40-rpts      D 5_______________)   (_________________WD 6________________)(_________________W

Query      321 TNDGMYLLSAGSYSRIRLWDIESGRNTLVNFETGRIQTDRAIQLDTSDDPALVFVPCMKTVKGFGMWSGRTTLMLRGHYE 400 
WD40-rpts      D 7________________)     (_________________WD 8_________________)   (___________

Query      401 SVNTCCFNSNDQELYTSGADRQIIVWSPGGSVEDEMAQGEVAEDKDNWSD 450 
WD40-rpts      ______WD 9________________)                       

9 WD40-repeats found in QUERY=AT1G19750.1 (Len=450):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    33-72       8.23  454.69  4.6e-05       30.0%     51.25
  WD 2:  Seg  9    95-132      7.86  439.53  7.4e-05       30.0%     44.71
  WD 3:  Seg 12   133-176      7.63  429.97  1.0e-04       15.0%     51.09
  WD 4:  Seg 16   180-219      8.96  484.80  1.8e-05       45.0%     55.79
  WD 5:  Seg 20   223-259      5.77  352.83  0.00109       17.5%     35.60
  WD 6:  Seg 23   263-301      8.26  456.02  4.4e-05       27.5%     42.36
  WD 7:  Seg 27   302-340      8.77  476.89  2.3e-05       27.5%     45.97
  WD 8:  Seg 30   346-385      6.30  374.97  0.00055       15.0%     52.68
  WD 9:  Seg 34   389-427      9.23  496.03  1.3e-05       27.5%     53.72

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-72     -SNRK----DFVSPHRGSVNSLQV-DLT-EGR-YLLSGAADGSAAVFD
   WD 2   95-132    ---RK----QHENGHKYAISSAIW-Y-PIDTG-MFITGSFDHYVKVWD
   WD 3  133-176    TNTSQVVVDFKMPGKVYRTAMSSM-A-M-SHT-LIAAGTDDVQVRLCD
   WD 4  180-219    -GAFS----HTLSGHRDGVMSVEW-S-T-SSEWVLYTGGCDGAIRFWD
   WD 5  223-259    -AGCF----RVLDNSQTQLGV--R-P-P-ILK-RPAVSSKFFSAAKSS
   WD 6  263-301    -QNWL----KTLQSKHTGSQSVKG-S-S-SEK-PSVEKSRQKRIHPGM
   WD 7  302-340    -LSTL----DRATAHYGVVTGLKA-T-N-DGM-YLLSAGSYSRIRLWD
   WD 8  346-385    -NTLV----NFETGRIQTDRAIQLDT-S-DDP-ALVFVPCMKTVKGFG
   WD 9  389-427    -GRTT----LMLRGHYESVNTCCF-N-S-NDQ-ELYTSGADRQIIVWS

   WD40 Template    TGECL----RTLSGHTSGVTSVSF-S-P-DGK-RLVSGSEDGTIKVWD