Input parameters:

  Query = AT1G20540.1 (Len=351)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G20540.1, Len=351):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEGLFSHPNEIWDLASCPFDQRI 80  
WD40-rpts          (___________________WD 1___________________)(______________________WD 2_____

Query       81 FSTVFSTGESFGAAIWQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVL 160 
WD40-rpts      ________________)            (_________________WD 3_________________)(__________

Query      161 SKDSAGMLHSLSGGAWDPHDVNAVAATGESSVQFWDLRTMKKVNSIEHAHVRGVDYNPKREHILVTAEDESGIHVWDLRK 240 
WD40-rpts      ___________WD 4____________________)(__________________WD 5_________________)   

Query      241 AKVPVQELPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLWYASATSSDDKTSESPVESTRQRVNPLLNSYTDYEDSVYGL 320 
WD40-rpts       (_________________WD 6_________________)                      (________________

Query      321 AWSSREPWVFASLSYDGRVIIESVKPFLPRI 351 
WD40-rpts      _WD 7_________________)        

7 WD40-repeats found in QUERY=AT1G20540.1 (Len=351):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-48       6.52  383.94  0.00042       12.5%     44.35
  WD 2:  Seg  5    49-97       5.90  358.53  0.00092       17.5%     50.98
  WD 3:  Seg  9   110-149      6.81  395.95  0.00029       20.0%     53.92
  WD 4:  Seg 13   150-196      7.70  432.69  9.2e-05       12.5%     51.03
  WD 5:  Seg 17   197-237      7.84  438.47  7.7e-05       25.0%     47.28
  WD 6:  Seg 20   242-281      6.98  403.19  0.00023       22.5%     49.72
  WD 7:  Seg 24   304-343      5.80  354.15  0.00105       17.5%     54.10

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-48     SS-------G-----IGYGLKYQSRCISDVKADT-DYT-S-FLTG----TLSLKEENEVHLLR
   WD 2   49-97     LS-------SGGSELICEGLFSHPNEIWDLASCP-FDQ-R-IFSTVFSTG----ESFGAAIWQ
   WD 3  110-149    -L-------E-----RVASLDAHVGKINCVLWWP-SGRCD-KLIS----I----DEQNIFLWS
   WD 4  150-196    LDCSKKSAEV-----LSKDSAGMLHSLSGGAWDP-HDV-N-AVAA----T----GESSVQFWD
   WD 5  197-237    LR-------T-----MKKVNSIEHAHVRGVDYNP-KRE-HILVTA----E----DESGIHVWD
   WD 6  242-281    -K-------V-----PVQELPGHTHWTWAVRCNP-EYDGL-ILSA----G----TDSVVNLWY
   WD 7  304-343    -N-------P-----LLNSYTDYEDSVYGLAWSSREPW-V-FASL----S----YDGRVIIES

   WD40 Template    TG-------E-----CLRTLSGHTSGVTSVSFSP-DGK-R-LVSG----S----EDGTIKVWD