Input parameters:
Query = AT1G21440.1 (Len=336)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G21440.1, Len=336):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSMLMAAKSTSLFSSNPTISAKIGQNPRGVRSVYPTVRMQSRVHRLIEEQGAVLIPGVYDALSAAIVQQTGFSAALISGY 80
WD40-rpts (__________
Query 81 ALSAVTLGKPDFGLITPPEMAATARSVCAAAPKIPIIADADTGGGNALNVQRTVKDLIAAGAAGCFLEDQAWPKRCGHMR 160
WD40-rpts ___________________________WD 1_____________________________________)
Query 161 GKEVIPAEEHAAKIASARDAIGDADFFLIARTDARALSAKTGLSDAIDRANLYMEAGADASFVEAPRDDDELKEIGRRTK 240
WD40-rpts
Query 241 GYRLCNMLEGGRTPLHTPDELKEMGFHLIAHPLTSLYASTRALVDVLKILKEKGTTKDHLEKMITFEEFNRLVNLDSWYE 320
WD40-rpts
Query 321 LETKYSNLRNALGETK 336
WD40-rpts
1 WD40-repeats found in QUERY=AT1G21440.1 (Len=336):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 70-149 2.95 236.34 0.03992 20.0% -7.81
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 70-149 TGFSAALISGYALSAVTLGKPDFGLITPPEMAATARSVCAAAPKIPIIADADTGGGNALNVQRTVKDLIAAGAAGCFLED
WD40 Template TGECLRTLSG----------HTSGVTS--------------VSFSPDGKRLVSGSED----------------GTIKVWD