Input parameters:

  Query = AT1G21580.1 (Len=2166)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G21580.1, Len=2166):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDSSHYNPTYDPWNSPYSPHLHPPSAPLPPPPPLPPPPPPRQSHPESPNLYGRSTQSNGQRQDYLHQYSHHRQDLPPNTV 80  
WD40-rpts                                                                                      

Query       81 VNQPTSNYYQHPPPLQQQHQPLSLQQQQQHPQYIPQQVSYEPQRISQPLTSSIQCTESQSDWVGFNEKRLDSWTVDSGPG 160 
WD40-rpts                                                                                      

Query      161 RSRVDDGPSRNYQYDYSRNSSGVNRGLDGSSRSRDEFRSLGYARKESGVTRTEGNYQARGQLKSESDRYVRGLGDGNRVL 240 
WD40-rpts                                                                                      

Query      241 SSSVGYGSDRYGLTVSRDVTRSSASREGARETRNEGRTLYPEKKDDYYHSEIEQYFDRGRREASNELNRTPRKQVQKKSA 320 
WD40-rpts                                                                                  (___

Query      321 LLRLETPRSYKNSRENEWSRQHNHHNGNGKRFNSNSYRGKEHLGHSDRGLVEKQRGRSPVDLDISFKSNVLVAKPVASPT 400 
WD40-rpts      ___________________WD 1_____________________)                                   

Query      401 SAGIRSGASVTPRSIKARRALLSDKNEKVSVTERNGKLGTHLSDEISVSEGFRRSTRQTTASKNEKEPDSHSTPSSSDSG 480 
WD40-rpts                                                                                      

Query      481 GKLNKVRFVNGVVQDSKVKLTDSGPEASTHDTEKISSFCETLIEAKDDINVKHGINTEACSTEEGVIDGNQSTLKSHEDV 560 
WD40-rpts                                                                                      

Query      561 LDRTSTDCNAGEALLPKVMEMDEILKTKTTINTSPGKLPVSWPTVADLSGCSEDMDCDEDMDCDEDMDCIPSRNIPMMEV 640 
WD40-rpts                                                                                      

Query      641 NTGFEERKSINSSDGSLGYGGKDFQKPYLDASIYFNREDPGDKVLAKSDIGGIEDDNKRIDKNVDSLSPENDSSRGRPMG 720 
WD40-rpts                                                                                      

Query      721 LDSPASLDIANVSLDLANSNNSASGDLANANSFTVGTYMNPMVTSPDKSVVFQMESKNLPHCKNTVNAPVENVSGKGYME 800 
WD40-rpts                                                                                      

Query      801 TTPLNVAAETADNMDSEEGKQTCVNDTSSSLTKVGVKGSSNVLSVERTGGCSHSDESDLAMAVPSEGCMENVSTERLVPD 880 
WD40-rpts                                                                                      

Query      881 EELILKSYHPAEIPCVDSGSDSRGLKTCLLEPNVSLSKDLTDCARESLVEQDVSQRSAIFCDKLPSLSAFVTETTLAIGI 960 
WD40-rpts                                                                                      

Query      961 NGMSGNETVTDTESGLHEIQPCTTVCKLSPEDRFGYGSSGAIGSVRSLSIDKNLEKDSSKVSSCLVSDNSVSPCHISPLV 1040
WD40-rpts                                                                                      

Query     1041 AVNEEIQNKISVKANYSNSQDGIKHKEDNCTESVEVETHEEKAKLPGGTSKYRTPVTNITAGSGGDSLFLCDSLSSSRRR 1120
WD40-rpts                                                                                      

Query     1121 IRSEVHVSAVVDETSKGEEKSKPSGGIVAVRRDSVFPCDSLSSSPRLSRPLRSEIHVASMVDETSKSIEKIESSGGTSEH 1200
WD40-rpts                                                                                      

Query     1201 RTPETDIVAGSRDSVFPCNSLSNSQRLSFRQLRSEIHVANMVDETNRVKESQNGDSLLDTLQEQIMTSHELTQPGSSAHC 1280
WD40-rpts                                                                                      

Query     1281 DLVMKPMGDPIAKLTDITSDVGSQEKDLRNIAKTDTFDGEAVSSDGQVSGTEIPGGSGVRVSRSYSHADVKFALTHVKEH 1360
WD40-rpts                                                                                      

Query     1361 VVSVPHRDPQSKTSMNSKYEIEKRKKKPNYSTQKSYPSSLPYVSDTKKDANPPIHITKRHTWHRKSDASPSSFVAAKPLS 1440
WD40-rpts                                                                                      

Query     1441 STLSTQQKFPKVTAQSNNSYVRKGNSLLRKPSHGSPGAALGIPPSAIQLNHFTVEDKSTGSSNMVDVDNASSLVKTGEIA 1520
WD40-rpts                                                                                      

Query     1521 TLERQSKPPSDSSTSKLSNAIATSSGKCALSYSTDHLTTGLPESIMDSATSGEANFPHSGGDTLKTSDTLIQTGYASDCQ 1600
WD40-rpts                                                                                      

Query     1601 QKRNPSDLDSSNLKRMVYVKRKANQLVAASDIHDVSQNQIPSSDGYFKRSKNQLVRNSESRCNQSISLPDDALDTRSAAN 1680
WD40-rpts                                                                                      

Query     1681 MVSERPSSSAFSDSAVMRPFKQSKFSLVWTQNDPQPRMPIAHMRNQNIVPQLVPWKRVTYWRRLMNSVSAFRNGSSLNIS 1760
WD40-rpts                                                                                      

Query     1761 RKLSMMRKRHTIYTRSTNGYSLRKSKVLSVGGSHLKWSKSIERDSRKANEEATLAVAAYSKKESEKQSGQNNTSTASRNH 1840
WD40-rpts                                                                                      

Query     1841 LARERVFRFGSLRYKMDSSRRTLQRISDVDSPCSGPSENGKGVKRPFIPKRLVIGNEEYVRFGNGNQLVRDPKKRTRVLA 1920
WD40-rpts                                                                                      

Query     1921 NEKVRWSLHNARLRLAKKKKYCQFFTRFGKCNKDDGKCPYVHDPSKIAVCTKFLNGLCANANCKLTHKVIPERMPDCSYY 2000
WD40-rpts                                                                                      

Query     2001 LQGLCNNEACPYRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNE 2080
WD40-rpts                                                                                      

Query     2081 PSQKNARRRYFSSLHNILSESEPMVFNRRSTDSEVFGMESLDFITLGTAEYEAGDDNDPATVQSISSDSESLISIYNLIT 2160
WD40-rpts                                                                                      

Query     2161 PVALMQ 2166
WD40-rpts            

1 WD40-repeats found in QUERY=AT1G21580.1 (Len=2166):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   317-365      3.10  242.55  0.03303       25.0%      1.82

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  317-365    KKSALLRLETPRSYKNSRENEWSRQHNHHNGNGKRFNSNSYRGKEHLGH

   WD40 Template    TGECLRTLSGHTSGVTSVS---------FSPDGKRLVSGSEDGTIKVWD