Accession: AT1G21650.3 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT1G21650.3 (Len=1805)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G21650.3, Len=1805):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQGPSALPKNIDLLRLFPSISKL 80  
WD40-rpts                                                                                      

Query       81 KLEPGRNFEKVVEFVTRSWSDDFYATWKDRILVHDAVSVEIRESESSDFDSSSRLCGSLRDDSKVSLLRVASFEHGDCDS 160 
WD40-rpts                                                                                      

Query      161 VLKYSYVQRMMSCLWGMREEERDELDAIISVKQRGVSKVFGLWGDLKNGVLYLVGEKLIGFSLEEFDSLEDETLRLGIIG 240 
WD40-rpts                                                                                      

Query      241 MQICEALLNLHKEGLITGCLSVSCVKFDEYENAYVDLIELIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIF 320 
WD40-rpts                                                                                      

Query      321 ISSEVLFEFLKEQNMLIKNTSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGITE 400 
WD40-rpts                                                                                      

Query      401 KLSLESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHKTIYGKRKQFCLAQSELCRLVEVE 480 
WD40-rpts                                                                                    (_

Query      481 SKEVDKELPGMKIGDEAEEGKVDIDFPGRVSEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTF 560 
WD40-rpts      ________________________________WD 1_________________________________)   (______

Query      561 KGHQDKVMALIHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTGSGDNTIKAW 640 
WD40-rpts      ___________WD 2_________________) (_____________________WD 3____________________

Query      641 SLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETPGIVRSILSLAADDQTLVAAYQNGD 720 
WD40-rpts      )   (________________WD 4_______________)                                   (___

Query      721 IQIWRDDTLMKSMKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFA 800 
WD40-rpts      __________________WD 5____________________)                                     

Query      801 DKTIKGNLGRLKRNVQDFTSMNYWVVRDYYRLVESVNSLEPQIQSLSDEQVKLSLKAKTAEFRERLARGESLADMQAEAF 880 
WD40-rpts                                                                                      

Query      881 AVVREAAKRTIGMRHFDVQIIGGGVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHR 960 
WD40-rpts                                                                                      

Query      961 FLGLSVGLIQRGMKAEERKFNYSCDITYTNNSELGFDYLRDNLTSNREQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLI 1040
WD40-rpts                                                                                      

Query     1041 SGEANENAARYPVAAKVAELLVKDSHYKVELKENSVELTEEGISLAEMALETGDLWDENDPWARFVMNALKAKEFYKRDV 1120
WD40-rpts                                                                                      

Query     1121 QYIVRDGKALIINELTGRVEDKRRWSEGVHQAVEAKEGLEIQADSIVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKM 1200
WD40-rpts                                                                                      

Query     1201 FQIPVIEVPTNLSNIRIDLPIQAFATARGKWEHVRREVEDMFGQGRPVLVGTTSVENSEYLSELLKEWGIPHNVLNARPK 1280
WD40-rpts                                                                                      

Query     1281 YAAREADFIAQAGRKYAITISTNMAGRGTDIILGGNPKMLAREIIEDSILSYLTSEVLADNIDDDELSQKVLSKIKVGPS 1360
WD40-rpts                                                                                      

Query     1361 SLALLARASLMAKYVGKSESKSWTRKKAKSVVTESLEKSQTMDPMELQNLINEQSEMYPLGPAIALAYLSVLKDCEAHCL 1440
WD40-rpts                                                                                      

Query     1441 HEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEG 1520
WD40-rpts                                                                                      

Query     1521 DTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQLLLTGENESCSQHIFQYMQAVVDEIVVGNSNPQKHP 1600
WD40-rpts                                                                                      

Query     1601 RYWSLAKLLKEFMAISGNLLDESFSGITEETMLQSLENLHEGSSIEMEDLSLPHLPKPPNAFRGIRRKNSSLRRWLDICS 1680
WD40-rpts                                                                                      

Query     1681 DNLTGSGSYRTLINLLRKFLGDYLIASYLNVVQESGFDDGYIKEIERAVLLKTLDCYWRDHLVNMNKLSSAVNVRSFAHR 1760
WD40-rpts                                                                                      

Query     1761 NPLEEYKIDGCRFFISMLSATRRLTVESILQYWSSPMESQELFIS 1805
WD40-rpts

5 WD40-repeats found in QUERY=AT1G21650.3 (Len=1805):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 14   479-550      3.91  276.29  0.01171       30.0%     25.68
  WD 2:  Seg 17   554-593      4.16  286.32  0.00859       27.5%     39.84
  WD 3:  Seg 21   595-641      4.11  284.26  0.00916       27.5%     27.23
  WD 4:  Seg 24   645-681      7.17  410.83  0.00018       40.0%     43.70
  WD 5:  Seg 30   717-763      5.27  332.44  0.00206       22.5%     42.16

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  479-550    VESKEVDKELPGMKIGDEAEEGKVDIDFPGRVSEGKVRSKDM--------RG---------HQDSVTGLAV--GGGFL-FSSSYDRTILIWS
   WD 2  554-593    -FS----------------------------------HVHTF--------KG---------HQDKVMALIHIEGTEPVCVSGDGGGGIFVWS
   WD 3  595-641    TFP----------------------------------LEEQPLRKWYEPKDW---------RYTGIHALAYSEYG-HV-YTGSGDNTIKAWS
   WD 4  645-681    -GS----------------------------------LLCTM--------SG---------HKSVVSTLVVV--NGVL-YSGSWDGTVRLWS
   WD 5  717-763    QNG----------------------------------DIQIW--------RDDTLMKSMKIQNGAILSIAV--NGKWL-FTGGWDKTINVQE

   WD40 Template    TGE----------------------------------CLRTL--------SG---------HTSGVTSVSFSPDGKRL-VSGSEDGTIKVWD