Input parameters:

  Query = AT1G21651.1 (Len=811)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G21651.1, Len=811):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEPECPVCLQSYDGESTVPRVLACGHTACEECLTNLPKKFPDTIRCPACTVLVKFPPQGPSALPKNIDLLRLFPSISKL 80  
WD40-rpts                                                                                      

Query       81 KLEPGRNFEKVVEFVTRSWSDDFYATWKDRILVHDAVSVEIRESESSDFDSSSRLCGSLRDDSKVSLLRVASFEHGDCDS 160 
WD40-rpts                                                                                      

Query      161 VLKYSYVQRMMSCLWGMREEERDELDAIISVKQRGVSKVFGLWGDLKNGVLYLVGEKLIGFSLEEFDSLEDETLRLGIIG 240 
WD40-rpts                                                                                      

Query      241 MQICEALLNLHKEGLITGCLSVSCVKFDEYENAYVDLIELIETGRNVYRIIAEETSSLRKPVGASEMGLIFVGLQQKGIF 320 
WD40-rpts                                                                                      

Query      321 ISSEVLFEFLKEQNMLIKNTSSKSFVSHNSDVWPVCFLLLKLRLGKRCTEEFIESVNCVDGKGCEEGIEDILVLYTGITE 400 
WD40-rpts                        (_________________WD 1________________)                       

Query      401 KLSLESELQGKFKSMVEILRQCCCLDPQARPVLTDLWKCIRELVMKPRFNSMSRLHKTIYGKRKQFCLAQSELCRLVEVE 480 
WD40-rpts                        (_________________WD 2________________)  (____________________

Query      481 SKEVDKELPGMKIGDEAEEGKVDIDFPGRVSEGKVRSKDMRGHQDSVTGLAVGGGFLFSSSYDRTILIWSLKDFSHVHTF 560 
WD40-rpts      _WD 3____________________)(___________________WD 4___________________)   (______

Query      561 KGHQDKVMALIHIEGTEPVCVSGDGGGGIFVWSTTFPLEEQPLRKWYEPKDWRYTGIHALAYSEYGHVYTGSGDNTIKAW 640 
WD40-rpts      ___________WD 5_________________)          (________________WD 6________________

Query      641 SLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLTVLGEETPGIVRSILSLAADDQTLVAAYQNGD 720 
WD40-rpts      )   (________________WD 7_______________)   (__________________WD 8_____________

Query      721 IQIWRDDTLMKSMKIQNGAILSIAVNGKWLFTGGWDKTINVQELSGDEISVNCAHVGSIPGSSVITSLLYWEGKLFAGFA 800 
WD40-rpts      ____)(________________WD 9________________)  (___________________WD10___________

Query      801 DKTIKVYYFGR 811 
WD40-rpts      _______)   

10 WD40-repeats found in QUERY=AT1G21651.1 (Len=811):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   339-377      5.07  324.25  0.00265       20.0%     21.99
  WD 2:  Seg 15   419-457      5.68  349.48  0.00121        5.0%     41.13
  WD 3:  Seg 19   460-506      5.77  352.81  0.00109       12.5%     30.76
  WD 4:  Seg 23   507-550      6.82  396.17  0.00028       32.5%     46.98
  WD 5:  Seg 27   554-593      7.23  413.42  0.00017       27.5%     54.86
  WD 6:  Seg 31   604-641      6.41  379.62  0.00048       25.0%     37.63
  WD 7:  Seg 34   645-681      7.73  434.01  8.8e-05       40.0%     52.43
  WD 8:  Seg 38   685-725      7.52  425.15  0.00012       27.5%     51.56
  WD 9:  Seg 42   726-763      7.68  431.74  9.4e-05       22.5%     41.65
  WD10:  Seg 46   766-808      5.94  359.91  0.00088       25.0%     44.88

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  339-377    -NTS------SKSFVSHNSDVW-------P--VCF-LLL----KLRLGKRCTEEFIESVN
   WD 2  419-457    -LRQ------CCCLDPQARPVL-------T--DLW-KCI----RELVMKPRFNSMSRLHK
   WD 3  460-506    YGKR------KQFCLAQSELCRLVEVESKE--VDK-ELP----GMKIGDEAEEGKVDIDF
   WD 4  507-550    PGRVSEGKVRSKDMRGHQDSVT-------G--LAV-G------GGFLFSSSYDRTILIWS
   WD 5  554-593    -FSH------VHTFKGHQDKVM-------A--LIHIEGT----EPVCVSGDGGGGIFVWS
   WD 6  604-641    -RKW------YEPKDWRYTGIH-------A--LAY-SEY----G-HVYTGSGDNTIKAWS
   WD 7  645-681    -GSL------LCTMSGHKSVVS-------T--LVV-V------NGVLYSGSWDGTVRLWS
   WD 8  685-725    -NSL------LTVLGEETPGIV-------RSILSL-AAD----DQTLVAAYQNGDIQIWR
   WD 9  726-763    DDTL------MKSMKIQNGAIL-------S--I---AVN----GKWLFTGGWDKTINVQE
   WD10  766-808    -GDE------ISVNCAHVGSIP-------G--SSV-ITSLLYWEGKLFAGFADKTIKVYY

   WD40 Template    TGEC------LRTLSGHTSGVT-------S--VSF-SPD----GKRLVSGSEDGTIKVWD