Input parameters:
Query = AT1G22280.3 (Len=287)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT1G22280.3, Len=287):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAY 80
WD40-rpts
Query 81 LQKRLFSNILKEVKTKKKGEFWVDPRRSIAKAYEKTDQAILSNSSDLGRGGSTAVTAILINGRKLWIANVGDSRAVLSHG 160
WD40-rpts (
Query 161 GAITQMSTDHEPRTERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGI 240
WD40-rpts ______________________WD 1_____________________)
Query 241 WKVMTNEEAMEIARRVKDPQKAAKELTAEALRRESKDDISCVVVRFR 287
WD40-rpts
1 WD40-repeats found in QUERY=AT1G22280.3 (Len=287):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 7 160-208 3.02 239.27 0.03651 20.0% 12.00
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 160-208 GGAITQMSTDHEPRTERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGD
WD40 Template TGECLRTLSGHTSG---------VTSVSFSPDGKRLVSGSEDGTIKVWD