Input parameters:

  Query = AT1G23820.1 (Len=378)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT1G23820.1, Len=378):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIFSVVRSSLPYIFRFTSHQNHHLSQTLVPPLSHFSEIFTRAITMDAKETSATDLKRPREEDDNGGAATMETENGDQKKE 80  
WD40-rpts                                                                                      

Query       81 PACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC 160 
WD40-rpts                                                              (_______________________

Query      161 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 240 
WD40-rpts      __WD 1_________________________)                                                

Query      241 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIG 320 
WD40-rpts                                                                                      

Query      321 FMLCSTEGPDVDFKHPLNPIDESSSKSNGPLKFYNAEIHSAAFCLPSFAKKVIESKAN 378 
WD40-rpts                                                                

1 WD40-repeats found in QUERY=AT1G23820.1 (Len=378):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   137-192      2.92  235.47  0.04099       27.5%     26.37

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  137-192    DGVIQLTERDECAYQEMITH---LPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQID

   WD40 Template    TGECLRTLSG---------HTSGVTSVSFSPDGKRLVSGSED----------GTIKVWD